MuGeN User Manual

Mark Hoebeke

INRA - Unité MIG

mhoebeke@jouy.inra.fr

Table of Contents

What is MuGeN ?

Interactive navigation features
Image output features

Installing MuGeN

System Requirements
Software dependencies
Installation procedure

Using MuGeN

Interactive Annotated Genome Navigation
Generating Annotated Genome Images
The MuGeN preferences file
Computer Analysis Result formats
MuGeN Option List

List of Tables
1. Modules Needed by MuGeN
2. Optional Modules for MuGeN
3. Options common to mugenb and mugenv
4. Options specific to mugenb

List of Figures
1. Sample MuGeN output
2. The Map List Window
3. The Map Drawing Window
4. The Information Window

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