MuGeN User Manual

Mark Hoebeke

INRA - Unité MIG

mhoebeke@jouy.inra.fr

Table of Contents

What is MuGeN ?

Installing MuGeN

System Requirements
Software dependencies
Installation procedure

Using MuGeN

Using mugenv for Interactive Genome Exploration
Generating Annotated Genome Images
The MuGeN preferences file
Computer Analysis Result formats
MuGeN Option List

A. Secondary dependencies

C libraries
Perl modules

List of Tables
1. Modules Needed by MuGeN
2. Optional Modules for MuGeN
3. Options common to mugenb and mugenv
4. Options specific to mugenb

List of Figures
1. The Map List Window
2. The Map Drawing Window
3. The Information Window

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