MuGeN User Manual

Mark Hoebeke

Laboratoire Statistique & Génome

Unité MIG

Table of Contents
MuGeN User Manual
What is MuGeN ?
What's New ?
Installing MuGeN
System Requirements
Software dependencies
Installation procedure
Using MuGeN
Using mugen for Interactive Genome Exploration
Generating Annotated Genome Images with mugenb
The MuGeN preferences file
Computer Analysis Result formats
MuGeN Option List
A. Secondary dependencies
C libraries
Perl modules
B. Installing MuGeN on MacOS X
List of Tables
1. Modules Needed by MuGeN
2. Optional Modules for MuGeN
3. Options common to mugenb and mugenv
4. Options specific to mugenb
List of Figures
1. The Map List Window
2. The Map Drawing Window
3. The Information Window
4. The Result Information Window
5. A lineplot example
6. A boxplot example
7. A histogram example
8. A linkplot example
List of Examples
1. PNG image generation
2. Loading multiple maps and analysis results
3. Anchoring maps
4. Using remote data sources and flipping maps
5. Generating clickable image maps
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  MuGeN User Manual