MuGeN User Manual
Mark Hoebeke
Laboratoire Statistique & Génome
<
mhoebeke{at}genopole{dot}cnrs{dot}fr
>
Unité MIG
<
Mark.Hoebeke{at}jouy{dot}inra{dot}fr
>
Table of Contents
What is
MuGeN
?
What's New ?
Installing
MuGeN
System Requirements
Software dependencies
Installation procedure
Using
MuGeN
Using
mugen
for Interactive Genome Exploration
Generating Annotated Genome Images with
mugenb
The
MuGeN
preferences file
Computer Analysis Result formats
MuGeN
Option List
A.
Secondary dependencies
C libraries
Perl modules
B.
Installing MuGeN on MacOS X
List of Tables
1.
Modules Needed by
MuGeN
2.
Optional Modules for
MuGeN
3.
Options common to
mugenb
and
mugenv
4.
Options specific to
mugenb
List of Figures
1.
The Map List Window
2.
The Map Drawing Window
3.
The Information Window
4.
The Result Information Window
5.
A lineplot example
6.
A boxplot example
7.
A histogram example
8.
A linkplot example
List of Examples
1.
PNG image generation
2.
Loading multiple maps and analysis results
3.
Anchoring maps
4.
Using remote data sources and flipping maps
5.
Generating clickable image maps
Next