Directory Agmial2/ca_manager/src/cam/admin/

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Most Recent Commits

vloux 2006-10-25 11:34

Merge CedricSoubrie branch and HEAD

2 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: GlobalAdmin.java (+2 -2)

vloux 2006-03-17 17:32

BugFix

CAM :
contigDB
Gestion DataSource
Prepa release 20060317

227 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: ContigStoreAdminIF.java (+1 -1), ContigStoreAdminImpl.java (+4 -4), GlobalAdmin.java (+154 -141), MonitorBatchTasks.java (+13 -3), MonitorContigTasks.java (+12 -3), MonitorFeatureTasks.java (+13 -3), MonitorProjectTasks.java (+13 -8), changeLocalisation.java (+17 -18)

vloux 2006-02-28 16:10

[#200] Export donn?es format tabul? CGView
Ajout properties pour affichage Lien CGView (cgview.enabled)
Creation CGViewPanel
+ Nettoyage (template)_project_properties
+ Generation auto liens du main_menu.html par build.xml

10 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: GlobalAdmin.java (+10 -10)

vloux 2006-01-17 11:45

Changement de start ? la vol?e (Affichage dans editFeature de tous les starts putatifs de l'ORF, transmission des annotations existantes). Debug

293 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: changeLocalisation.java (+293 -17)

vloux 2006-01-16 08:58

Changement de start ? la vol?e (Affichage dans editFeature de tous les starts putatifs de l'ORF, transmission des annotations existantes).

282 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: changeLocalisation.java (new 282)

vloux 2005-09-22 17:11

BugFixes

639 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: AddBatch.java (+93 -92), AddProject.java (+7 -1), ContigStoreAdminImpl.java (+479 -455), GlobalAdmin.java (+48 -53), MonitorProjectTasks.java (+7 -2), ShowAddBatch.java (+4 -3), ShowAddProject.java (+1)

vloux 2005-08-24 10:54

CAM Summer Cleaning !
Various code cleaning (imports, externalisation of some parameters in properties files).

39 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: GlobalAdmin.java (+4 -4), MonitorProjectTasks.java (-4), MonitorTasks.java (-3), ShowAddBatch.java (+8 -7), ShowAddProject.java (+5), ShowAdminBatches.java (+4 -3), ShowUpdateProfile.java (+4), UpdateContig.java (+6), UpdateProfile.java (+8 -1)

vloux 2005-08-23 16:59

CAM Summer Cleaning !

+ Database Pooling with apache dbcp (Database Connection Pools <http://jakarta.apache.org/commons/dbcp/>) served via jni to the servlet. Added a context.xmlfile with all the parameters for the connection.

+ Users and Roles are no longer stored in an xml file. Management via a dedicated database, served via jni to the servlets.

CAM refactoring :
moving all select/update/insert statement into contigdb package :

admin/ContigStoreAdminImpl.java OK (2)
admin/MonitorBatchTasks.java OK (1)(2)
admin/MonitorContigTasks.java OK (2)
admin/MonitorFeatureTasks.java OK (2)
admin/MonitorProjectTasks.java OK (2)
admin/MonitorTasks.java OK (2)
admin/ShowAddBatch.java OK (2)
admin/ShowAdminBatches.java OK (2)
admin/ShowUpdateContig.java OK (2)
admin/ShowUpdateProfile.java OK (2)

control/BatchActionMotivation.java OK(2)
control/BatchActionQueue.java OK(2)
control/BatchCalcAction.java OK(2)
control/ContigActionMotivation.java OK(2)
control/ContigActionQueue.java OK(2)
control/FeatureActionQueue.java OK(2)(3)
control/ProjectActionQueue.java OK(2)
control/ProjectMotivation.java OK(2)
control/QueryFeatureMotivation.java OK(2)

reader/ContigStoreQueryImpl.java OK
reader/EditFeature.java OK(2)
reader/MugenPanel.java TODO
reader/ProfileStoreQueryImpl.java OK(2)


(1) CAMActionList creation
(2) new methods in ContigDB
(3) CAMFeature creation

New policy for database accession :
All db accession is made via classes from the contigdb package.

For each object , two classes : CAMObject is the POJO
object.CAMOjectSchema is the Data Transfer Object and make the link
between the database and the POJO.
The CAMObjectSchema has at least two methods : add(CAMObjectSchema)
and update CAMObjectSchema();
ContigDB provide methods to interact with the object, mainly
getters/setters that call the corresponding methods in CAMObjectSchema.


--> reader/MugenPanel.java TODO

767 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: AddBatch.java (+6), AddProject.java (+5), ContigStoreAdminImpl.java (+10 -58), GlobalAdmin.java (+118 -11), LockContig.java (+6), MonitorBatchTasks.java (+42 -56), MonitorContigTasks.java (+146 -160), MonitorFeatureTasks.java (+46 -53), MonitorProjectTasks.java (+164 -159), MonitorTasks.java (+143 -136), ShowAddBatch.java (+13 -12), ShowAdminBatches.java (+4 -45), ShowUpdateContig.java (+27 -25), ShowUpdateProfile.java (+33 -35), UpdateContig.java (+4 -3)

vloux 2005-06-21 10:11

GlobalPanel
MugenPanel Interface (admin & readOnly) Improved
Multiple bugfixes

362 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: AddBatch.java (+9 -3), ContigStoreAdminIF.java (+1 -2), ContigStoreAdminImpl.java (+33 -11), GlobalAdmin.java (new 200), ProfileStoreAdminIF.java (+1 -1), ProfileStoreAdminImpl.java (+3 -1), ShowAddBatch.java (+74 -71), ShowAdminBatches.java (+41 -39)

vloux 2005-04-14 07:53

Ajout de la gestion des pseudogenes :
- Checkbox pseudo et text input pseudogene number dans ProteinPanel
- Changement des Interfaces de comm PAM/CAM -> wsdl ? regenerer et ? copier dans src_wsdl

14 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: ContigStoreAdminIF.java (+1 -1), ContigStoreAdminImpl.java (+13 -6)

vloux 2005-04-11 15:04

Nettoyage du code : imports, methodes deprecated ...

196 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: AddBatch.java (+9 -11), AddProject.java (+6 -9), ContigStoreAdminImpl.java (+29 -14), LockContig.java (+7 -15), MonitorBatchTasks.java (+12 -8), MonitorContigTasks.java (+12 -8), MonitorFeatureTasks.java (+12 -8), MonitorProjectTasks.java (+12 -8), MonitorTasks.java (+12 -8), ProfileStoreAdminImpl.java (+9 -11), ShowAddBatch.java (+12 -10), ShowAddProject.java (+7 -4), ShowAdminBatches.java (+12 -6), ShowUpdateContig.java (+12 -6), ShowUpdateProfile.java (+12 -6), UpdateContig.java (+11 -15), UpdateProfile.java (+10 -16)

vloux 2005-03-02 16:27

Modifs sur en tete GPL
Correction du build.xml
Bugfix contextlistener.java
Ajout lien vers MuGenPanel dans ProteinPanel

19 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: AddBatch.java (+1 -1), AddProject.java (+1 -1), ContigStoreAdminIF.java (+1 -1), ContigStoreAdminImpl.java (+1 -1), LockContig.java (+1 -1), MonitorBatchTasks.java (+1 -1), MonitorContigTasks.java (+1 -1), MonitorFeatureTasks.java (+1 -1), MonitorProjectTasks.java (+1 -1), MonitorTasks.java (+1 -1), ProfileStoreAdminIF.java (+1 -1), ProfileStoreAdminImpl.java (+1 -1), ShowAddBatch.java (+1 -1), ShowAddProject.java (+1 -1), ShowAdminBatches.java (+1 -1), ShowUpdateContig.java (+1 -1), ShowUpdateProfile.java (+1 -1), UpdateContig.java (+1 -1), UpdateProfile.java (+1 -1)

vloux 2005-02-10 10:24

Preambule GPL

361 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: AddBatch.java (+19), AddProject.java (+19), ContigStoreAdminIF.java (+19), ContigStoreAdminImpl.java (+19), LockContig.java (+19), MonitorBatchTasks.java (+19), MonitorContigTasks.java (+19), MonitorFeatureTasks.java (+19), MonitorProjectTasks.java (+19), MonitorTasks.java (+19), ProfileStoreAdminIF.java (+19), ProfileStoreAdminImpl.java (+19), ShowAddBatch.java (+19), ShowAddProject.java (+19), ShowAdminBatches.java (+19), ShowUpdateContig.java (+19), ShowUpdateProfile.java (+19), UpdateContig.java (+19), UpdateProfile.java (+19)

vloux 2005-02-08 14:57

Cassage de pipe (3)

Build.xml OK pour ca_manger et pa_manager.
Propage l'info conteue dans project_properties.
Fin (?) ajustements jwsdp1.5
Plus de startup_agmial/shutdown_agmial car nous deployons la webapp. A la place deploy-agmial/undeploy_agmial. La webapp est deployee -> il suffit de demarrer tomcat pour qu'elle soit dispo ...

0 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: ContigStoreAdminImpl.java (-1), ProfileStoreAdminImpl.java (-1)

rbossy 2004-09-29 16:40

Initial revision

2604 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: AddBatch.java (new 102), AddProject.java (new 79), ContigStoreAdminIF.java (new 20), ContigStoreAdminImpl.java (new 521), LockContig.java (new 72), MonitorBatchTasks.java (new 192), MonitorContigTasks.java (new 191), MonitorFeatureTasks.java (new 195), MonitorProjectTasks.java (new 191), MonitorTasks.java (new 153), ProfileStoreAdminIF.java (new 15), ProfileStoreAdminImpl.java (new 90), ShowAddBatch.java (new 98), ShowAddProject.java (new 54), ShowAdminBatches.java (new 107), ShowUpdateContig.java (new 106), ShowUpdateProfile.java (new 145), UpdateContig.java (new 154), UpdateProfile.java (new 119)