Directory Agmial2/pa_manager/src/pam/admin/

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Most Recent Commits

vloux 2007-12-10 10:36

ParalogyResults : jnpe correction.

28 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: UpdateAnnotation.java (+28 -5)

vloux 2007-01-25 18:10

Origin,goterms and Keyword display for homology result
Externalisation into HomologyPanel of HomologyResults display (from ProteinPanel)

5 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: UpdateAnnotation.java (+1 -32), UpdateFunction.java (+3 -37), UpdateLists.java (+1 -1)

vloux 2007-01-11 10:50

Changed DetrmineFunctionAction to trace where automartic annotation come from.
Authorized Manager to change status from Automatic down gto Original

51 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+51 -28)

vloux 2006-11-25 14:35

+ EC transfert : if descript contains (EC x.x.x.x) pattern, tansfer it to EC field

1 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+1 -1)

vloux 2006-10-25 11:41

Merge CedricSoubrie branch and HEAD

2 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: GlobalAdmin.java (+2 -2)

vloux 2006-03-16 13:01

Chgt wsdl
Pool connection sgbd
BugFix Search
Control

26 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminIF.java (+1 -1), ProteinSourceAdminImpl.java (+20 -12), UpdateFunction.java (+5 -5)

vloux 2006-03-07 15:27

[#197] Listes proteines
BugFix

10 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+10 -6)

vloux 2006-03-06 10:31

[#203] S?curit? : Single SignOn +Form based Login
PAM
[#213] Filtrer quote et retours chariots dans les formulaires
PAM

23 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+17 -2), UpdateAnnotation.java (+6 -1)

vloux 2006-02-27 14:41

AGMIAL Feature #197
Gestion liste : sauvegarde d'un resultat de recherche comme une nouvelle liste.

460 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+394 -324), UpdateLists.java (+66 -2)

vloux 2006-02-24 15:58

AGMIAL Feature #197
Gestion liste

693 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+493 -412), ShowAdminSources.java (+5 -1), UpdateAnnotation.java (+1 -1), UpdateFunction.java (+2 -2), UpdateLists.java (new 192)

vloux 2006-01-16 08:58

Changement de start ? la vol?e (Affichage dans editFeature de tous les starts putatifs de l'ORF, transmission des annotations existantes).

3 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+3 -2)

vloux 2005-09-01 17:00

PAM Summer cleaning

DBPooling with apache dbpc and jni.

PAM refactoring :
moving all select/update/insert statement into proteindb package :

reader/HomologyAlignPanel.java OK(1)(2)
reader/HomologyImagePanel.java OK(1)(2)
reader/HomologyPanel.java OK(1)(2)

reader/ProteinPanel.java OK (1),(2)

reader/QueryDataSets.java OK(1)
reader/QueryProteins.java OK(1)
reader/QueryProteinSources.java OK(1)

reader/SearchDataSets.java OK
reader/SearchProteinSources.javaOK
reader/SearchResults.java TODO (Need to reorganize the search ->
will be done at that moment)


admin/MonitorProteinRefTasks.java OK(1),(3)
admin/MonitorProteinTasks.java OK(1)
admin/MonitorTasks.java OK(1)
admin/RetireProteins.java OK(1)
admin/ShowAddProteins.java OK
admin/ShowRetireProteins.java OK

control/AfterActionMotivation.java OK
control/DetermineFunctionAction.java OK(1)
control/HomologyResultsMotivation.java OK(1)
control/NotifyFunctionMotivation.java OK
control/ParalogResultsMotivation.java DELETED
control/ProteinActionMotivation.java OK
control/ProteinActionQueue.java OK
control/ProteinRefActionQueue.java OK
control/SwissAnnotAction.java OK

(1)new methods in ProteinDB
(2) new DTO classes
(3) new classes in proteinDB

315 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: AddProteinSource.java (+5), AddProteins.java (+5), GlobalAdmin.java (+12 -18), MonitorProteinRefTasks.java (+33 -45), MonitorProteinTasks.java (+34 -46), MonitorTasks.java (+19 -23), ProteinSourceAdminImpl.java (+10 -4), RetireProteins.java (+21 -17), ShowAddProteinSource.java (+5), ShowAddProteins.java (+84 -89), ShowAdminSources.java (+5), ShowRetireProteins.java (+70 -75), UpdateAnnotation.java (+5), UpdateFunction.java (+7 -5)

vloux 2005-06-24 17:26

+ Transfer annotation from a paralog (for batch to batch manual transfer)

252 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: UpdateFunction.java (+252 -125)

vloux 2005-06-21 10:11

GlobalPanel
MugenPanel Interface (admin & readOnly) Improved
Multiple bugfixes

221 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: GlobalAdmin.java (new 207), ProteinSourceAdminIF.java (+1), ProteinSourceAdminImpl.java (+4 -1), ShowAdminSources.java (+9 -2)

vloux 2005-04-14 07:53

Ajout de la gestion des pseudogenes :
- Checkbox pseudo et text input pseudogene number dans ProteinPanel
- Changement des Interfaces de comm PAM/CAM -> wsdl ? regenerer et ? copier dans src_wsdl

47 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminIF.java (+1 -2), ProteinSourceAdminImpl.java (+30 -14), UpdateFunction.java (+16 -5)

vloux 2005-04-11 15:04

Nettoyage du code : imports, methodes deprecated ...

139 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: AddProteinSource.java (+6 -11), AddProteins.java (+13 -15), MonitorProteinRefTasks.java (+12 -8), MonitorProteinTasks.java (+12 -8), MonitorTasks.java (+12 -8), ProteinSourceAdminImpl.java (+19 -12), RetireProteins.java (+13 -12), ShowAddProteinSource.java (+6 -5), ShowAddProteins.java (+12 -11), ShowAdminSources.java (+6 -8), ShowRetireProteins.java (+12 -11), UpdateAnnotation.java (+7 -12), UpdateFunction.java (+9 -13)

vloux 2005-03-02 16:25

Modifs sur en tete GPL
Correction du build.xml
Bugfix contextlistener.java
Ajout lien vers MuGenPanel dans ProteinPanel

14 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: AddProteinSource.java (+1 -1), AddProteins.java (+1 -1), MonitorProteinRefTasks.java (+1 -1), MonitorProteinTasks.java (+1 -1), MonitorTasks.java (+1 -1), ProteinSourceAdminIF.java (+1 -1), ProteinSourceAdminImpl.java (+1 -1), RetireProteins.java (+1 -1), ShowAddProteinSource.java (+1 -1), ShowAddProteins.java (+1 -1), ShowAdminSources.java (+1 -1), ShowRetireProteins.java (+1 -1), UpdateAnnotation.java (+1 -1), UpdateFunction.java (+1 -1)

vloux 2005-02-10 10:27

Preambule GPL

266 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: AddProteinSource.java (+19), AddProteins.java (+19), MonitorProteinRefTasks.java (+19), MonitorProteinTasks.java (+19), MonitorTasks.java (+19), ProteinSourceAdminIF.java (+19), ProteinSourceAdminImpl.java (+19), RetireProteins.java (+19), ShowAddProteinSource.java (+19), ShowAddProteins.java (+19), ShowAdminSources.java (+19), ShowRetireProteins.java (+19), UpdateAnnotation.java (+19), UpdateFunction.java (+19)

vloux 2005-02-08 14:58

Cassage de pipe (5)

Build.xml OK pour ca_manger et pa_manager.
Propage l'info conteue dans project_properties.
Fin (?) ajustements jwsdp1.5
Plus de startup_agmial/shutdown_agmial car nous deployons la webapp. A la place deploy-agmial/undeploy_agmial. La webapp est deployee -> il suffit de demarrer tomcat pour qu'elle soit dispo ...

1 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: UpdateFunction.java (+1 -1)

vloux 2005-01-10 17:08

Bugfix

62 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: UpdateAnnotation.java (+32 -1), UpdateFunction.java (+30 -1)

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