Directory Agmial2/pa_manager/src/pam/reader/

Directory Created:
2004-09-29 16:40
Total Files:
33
Deleted Files:
2
Lines of Code:
8661

[root]/Agmial2/pa_manager/src/pam/reader

Lines of Code

Agmial2/pa_manager/src/pam/reader/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 218 (100.0%) 13442 (100.0%) 61.6
vloux 190 (87.2%) 8520 (63.4%) 44.8
rbossy 27 (12.4%) 4919 (36.6%) 182.1
fpapazia 1 (0.5%) 3 (0.0%) 3.0

Most Recent Commits

vloux 2008-03-04 10:23

Multiple EC in external tools bugfix

10 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: ExternalTools.java (+10 -1)
vloux 2007-12-10 10:36

ParalogyResults : jnpe correction.

3 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: HomologyPanel.java (+1 -1), ParalogyTable.java (+2 -1)
vloux 2007-05-29 16:03

BugFix:
incorrect deletion of HomologyAlignPanel
Wrong result number passed to HomologyAlignPanel

167 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: HomologyAlignPanel.java (new 166), HomologyPanel.java (+1 -1)
vloux 2007-03-09 13:26

bugfix : pareo link
cdd graphic
missing features in protein panel

14 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: ExternalTools.java (+2 -2), HomologyGraphic.java (+5 -5), ProteinPanel.java (+7 -5)
vloux 2007-02-07 14:44

Keywords and Goterms summary

715 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: FeaturePanel.java (new 399), HomologyPanel.java (+309 -88), ProteinPanel.java (+7 -279)
vloux 2007-01-25 18:10

Origin,goterms and Keyword display for homology result
Externalisation into HomologyPanel of HomologyResults display (from ProteinPanel)

470 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: HomologyAlignPanel.java (del), HomologyGraphic.java (+32 -15), HomologyImagePanel.java (del), HomologyPanel.java (+321 -146), HomologyTable.java (+90 -34), ProteinPanel.java (+27 -220)
vloux 2007-01-24 18:15

Added classes to manage goterms, keywords and origin of a match.
Display of origin in table and graphics

241 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: CDDTable.java (+15 -1), HomologyGraphic.java (+112 -32), HomologyTable.java (+47 -6), ProteinPanel.java (+67 -60)
fpapazia 2006-12-21 16:51

correction (inherited from vloux)

3 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+3 -3)
vloux 2006-11-25 14:35

+ EC transfert : if descript contains (EC x.x.x.x) pattern, tansfer it to EC field

1 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+1 -1)
vloux 2006-11-22 18:10

- EasyQB : changed default limit for list (5000) and DOJOTable (100) both in DisplayerAdpater and web.xml.in
- ExternalTools : bugfix in the way multiple generated form are named

2 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: ExternalTools.java (+2 -2)
vloux 2006-11-22 17:29

- GlobalPanel : cosmetic fix.
- Added a new page "External Tools" with links to blast, artemis and metabolism comparison.

173 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: ExternalTools.java (new 166), GlobalPanel.java (+7 -4)
vloux 2006-11-16 17:39

Addition of a statistics page with pie charts (Function, Status, EC) made with JFreeChart : cosmetic fix

21 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: GlobalPanel.java (+21 -5)
vloux 2006-11-16 16:46

Addition of a statistics page with pie charts (Function, Status, EC) made with JFreeChart.

352 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: GlobalPanel.java (new 143), GlobalPieChart.java (new 209)
vloux 2006-11-14 17:41

Regression fix : Fasta export and List save

2 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: QueryProteins.java (+2 -2)
vloux 2006-10-25 11:41

Merge CedricSoubrie branch and HEAD

128 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: FindResult.java (new 126), ProteinPanel.java (+2 -8)
vloux 2006-05-29 16:06

Feature #246
Search by Interpro/Motif-Domain database Id or Name

49 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: SearchResults.java (+35 -6), SearchResultsPanel.java (+14 -1)
vloux 2006-05-03 17:42

#BugFix :
Paralog display (ParalogyTable // HomologyGraphic)
SerachAnnotationPanel : serach by gene of interest fixed.

452 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: HomologyGraphic.java (+18 -8), HomologyTable.java (+13 -15), JalviewLauncher.java (+9 -2), ParalogTable.java (del), ParalogyTable.java (new 302), ProteinPanel.java (+96 -3), SearchAnnotationPanel.java (+14 -13)
vloux 2006-04-20 16:59

ConnectionPool :
- clean destroy

ActionsQueues/Motivations :
- sleepTime passed in constructor

ProteinDB/DAOs :
- statements not released properly causing locks

1 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+1 -9)
vloux 2006-04-04 15:04

Browse by Locus Tag

760 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+12), QueryDataSets.java (+17 -3), QueryProteins.java (+22 -15), SearchAnnotationPanel.java (+326 -241), SearchResults.java (+146 -54), SearchResultsPanel.java (+237 -195)
vloux 2006-03-17 17:13

Bugfixes

4 lines of code changed in:

  • Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+4 -4)

(30 more)

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