Directory BioTools/src/biotools/protein/

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vloux 2007-02-07 14:49

Added classes to manage goterms, keywords and origin of a match.

518 lines of code changed in:

• BioTools/src/biotools/protein: Annot.java (+34), ProteinSwissEntry.java (new 341), ProteinSwissText.java (new 106), SwissEntry.java (del), SwissText.java (del), TextAnnot.java (+37)

vloux 2007-01-25 18:02

Tests
GOTermTable & AnnotTable implements Iteratable to permits "foreach" loop
HomologyMatchPair.Ontology enum comes with abbreviation and definition
Various fixes

34 lines of code changed in:

• BioTools/src/biotools/protein: AnnotTable.java (+6 -1), GOTerm.java (+15 -7), GOTermTable.java (+7 -1), PirText.java (+1 -1), ProteinFastAEntry.java (+2), ProteinFastAText.java (+2 -2), ProteinPirText.java (+1 -1)

vloux 2007-01-24 18:09

Added classes to manage goterms, keywords and origin of a match.
Display of origin in table and graphics

108 lines of code changed in:

• BioTools/src/biotools/protein: AnnotTable.java (+6 -1), GOTerm.java (+27 -5), GOTermTable.java (new 64), TextAnnot.java (+11)

vloux 2007-01-11 17:49

GOterm encapsulation class with real pieces of java1.5 inside

196 lines of code changed in:

• BioTools/src/biotools/protein: GOTerm.java (new 196)

vloux 2005-09-14 15:41

Package Reorganisation :
Tests in a separate folder but still belong to the same package.

0 lines of code changed in:

• BioTools/src/biotools/protein: protein-a.ucd (new)

vloux 2005-08-09 11:22

Formatage code

1624 lines of code changed in:

• BioTools/src/biotools/protein: Annot.java (+18 -18), AnnotTable.java (+24 -24), EntryDate.java (+12 -13), FloatAnnot.java (+4 -7), OrganismAnnot.java (+10 -11), PirEntry.java (+56 -64), PirText.java (+70 -66), Protein.java (+30 -40), ProteinEntry.java (+28 -28), ProteinEntryPosn.java (+16 -15), ProteinFastAEntry.java (+82 -86), ProteinFastAText.java (+82 -77), ProteinFeature.java (+34 -33), ProteinFeatureTable.java (+22 -31), ProteinPirEntry.java (+65 -72), ProteinPirText.java (+74 -69), ProteinRes.java (+45 -37), ProteinResCased.java (+155 -173), ProteinResStandard.java (+124 -137), ProteinResTranslated.java (+365 -371), ProteinSource.java (+9 -14), ProteinText.java (+18 -12), SwissEntry.java (+207 -209), SwissText.java (+70 -66), TextAnnot.java (+4 -7)

vloux 2005-04-20 13:43

boolean NucleicFeature.existQualifier
Nettoyage du code.

249 lines of code changed in:

• BioTools/src/biotools/protein: AnnotTable.java (+6 -1), EntryDate.java (+30 -3), FloatAnnot.java (+16 -3), Protein.java (+59 -13), ProteinEntry.java (+7 -1), ProteinEntryPosn.java (+42 -14), ProteinFeature.java (+61 -11), ProteinFeatureTable.java (+6), ProteinText.java (+6 -2), TextAnnot.java (+16 -3)

vloux 2005-04-11 14:43

Nettoyage du code : imports, methodes deprecated ...

30 lines of code changed in:

• BioTools/src/biotools/protein: Annot.java (-1), AnnotTable.java (+1 -4), FloatAnnot.java (-3), OrganismAnnot.java (-4), PirText.java (+5 -3), Protein.java (-3), ProteinEntryPosn.java (+2 -4), ProteinFastAText.java (+5 -3), ProteinFeature.java (-3), ProteinFeatureTable.java (+1 -4), ProteinPirText.java (+5 -3), ProteinRes.java (+2 -3), ProteinSource.java (-3), ProteinText.java (+4 -4), SwissText.java (+5 -3), TextAnnot.java (-3)

vloux 2005-04-05 09:03

Effac?s par erreur

2914 lines of code changed in:

• BioTools/src/biotools/protein: Annot.java (new 68), AnnotTable.java (new 40), EntryDate.java (new 46), FloatAnnot.java (new 36), OrganismAnnot.java (new 41), PirEntry.java (new 96), PirText.java (new 95), Protein.java (new 126), ProteinEntry.java (new 62), ProteinEntryPosn.java (new 45), ProteinFastAEntry.java (new 134), ProteinFastAText.java (new 106), ProteinFeature.java (new 142), ProteinFeatureTable.java (new 62), ProteinPirEntry.java (new 121), ProteinPirText.java (new 96), ProteinRes.java (new 85), ProteinResCased.java (new 295), ProteinResStandard.java (new 259), ProteinResTranslated.java (new 581), ProteinSource.java (new 39), ProteinText.java (new 30), SwissEntry.java (new 209), SwissText.java (new 64), TextAnnot.java (new 36)

vloux 2005-04-04 15:26

Bugfixes

0 lines of code changed in:

• BioTools/src/biotools/protein: Annot.java (del), AnnotTable.java (del), EntryDate.java (del), FloatAnnot.java (del), OrganismAnnot.java (del), PirEntry.java (del), PirText.java (del), Protein.java (del), ProteinEntry.java (del), ProteinEntryPosn.java (del), ProteinFastAEntry.java (del), ProteinFastAText.java (del), ProteinFeature.java (del), ProteinFeatureTable.java (del), ProteinPirEntry.java (del), ProteinPirText.java (del), ProteinRes.java (del), ProteinResCased.java (del), ProteinResStandard.java (del), ProteinResTranslated.java (del), ProteinSource.java (del), ProteinText.java (del), README (del), SwissEntry.java (del), SwissText.java (del), TextAnnot.java (del), errors (del)

rbossy 2004-09-29 16:40

Initial revision

2914 lines of code changed in:

• BioTools/src/biotools/protein: Annot.java (new 68), AnnotTable.java (new 40), EntryDate.java (new 46), FloatAnnot.java (new 36), OrganismAnnot.java (new 41), PirEntry.java (new 96), PirText.java (new 95), Protein.java (new 126), ProteinEntry.java (new 62), ProteinEntryPosn.java (new 45), ProteinFastAEntry.java (new 134), ProteinFastAText.java (new 106), ProteinFeature.java (new 142), ProteinFeatureTable.java (new 62), ProteinPirEntry.java (new 121), ProteinPirText.java (new 96), ProteinRes.java (new 85), ProteinResCased.java (new 295), ProteinResStandard.java (new 259), ProteinResTranslated.java (new 581), ProteinSource.java (new 39), ProteinText.java (new 30), README (new), SwissEntry.java (new 209), SwissText.java (new 64), TextAnnot.java (new 36), errors (new)