[root]/BioTools/src/biotools/util
Author | Changes | Lines of Code | Lines per Change |
---|---|---|---|
Totals | 78 (100.0%) | 11430 (100.0%) | 146.5 |
vloux | 62 (79.5%) | 7621 (66.7%) | 122.9 |
rbossy | 16 (20.5%) | 3809 (33.3%) | 238.0 |
Various test backbones
Added a test (BioToolsTest) that check the avalaibility of the executables described in ./biotool.props
Changed build.xml to run the proper test.
ATTN problem with Ant classloading -> ant must be launched with -lib and path to ant-junit.jar and junit.jar OR , in case of eclipse, those two modules have to be added on the ant classpath
16 lines of code changed in:
PAM Summer cleaning
DBPooling with apache dbpc and jni.
PAM refactoring :
moving all select/update/insert statement into proteindb package :
reader/HomologyAlignPanel.java OK(1)(2)
reader/HomologyImagePanel.java OK(1)(2)
reader/HomologyPanel.java OK(1)(2)
reader/ProteinPanel.java OK (1),(2)
reader/QueryDataSets.java OK(1)
reader/QueryProteins.java OK(1)
reader/QueryProteinSources.java OK(1)
reader/SearchDataSets.java OK
reader/SearchProteinSources.javaOK
reader/SearchResults.java TODO (Need to reorganize the search ->
will be done at that moment)
admin/MonitorProteinRefTasks.java OK(1),(3)
admin/MonitorProteinTasks.java OK(1)
admin/MonitorTasks.java OK(1)
admin/RetireProteins.java OK(1)
admin/ShowAddProteins.java OK
admin/ShowRetireProteins.java OK
control/AfterActionMotivation.java OK
control/DetermineFunctionAction.java OK(1)
control/HomologyResultsMotivation.java OK(1)
control/NotifyFunctionMotivation.java OK
control/ParalogResultsMotivation.java DELETED
control/ProteinActionMotivation.java OK
control/ProteinActionQueue.java OK
control/ProteinRefActionQueue.java OK
control/SwissAnnotAction.java OK
(1)new methods in ProteinDB
(2) new DTO classes
(3) new classes in proteinDB
196 lines of code changed in:
Formatage code
3522 lines of code changed in:
boolean NucleicFeature.existQualifier
Nettoyage du code.
75 lines of code changed in:
Nettoyage du code : imports, methodes deprecated ...
3 lines of code changed in:
Effac?s par erreur
3809 lines of code changed in:
Bugfixes
0 lines of code changed in:
Initial revision
3809 lines of code changed in: