Objectives

Provide a formation to Transys students on text-mining methods in Biology. Contribute to the design of specific knowledge bases in the domain of mebrane biology of bacteria for improving bibliography search by BioAlvis.

Three day program

• 15:00 Introduction

• 15:20 Text-mining in biology, a general introduction (Claire) Demonstration of CadInteract, BioAlvis, CoCitation.

• 17:00 Presentation of the gene renaming task (Julien)

• 17:30 End of the day

• 9 :15 Training session with Cadixe for the annotation of gene renaming mentions (binomes)

• 9 :45 Start of the annotation of gene renaming mentions

• 10 :30 Coffee break

• 11 :00 Annotation session (cont.)

• 12 :00 Lunch (restaurant du personnel)

• 13 :30 Annotation session (cont.)

• 16 :00 Coffee break

• 16 :30 Annotation session (cont.)

• 17 :00 End of the day

• 9 :15 Presentation of the gene synonymy conflict task (Julien)

• 9 :45 Training session for the gene synonymy conflict task

• 10 :30 Coffee break

• 11 :00 Gene synonymy conflict task

• 12 :00 Lunch (restaurant du personnel)

• 13 :30 Gene synonymy conflict task (cont.)

• 16 :00 Coffee break

• 16 :30 Introduction to ontology design (Claire)

• 17 :00 End of the day

• 9 :15 Presentation of the ontology design task in biology of membrane (Philippe - Sophie)

• 9 :45 Training session for the ontology design task

• 10 :30 Coffee break

• 11 :00 Ontology design task

• 12 :00 End of the training session