Program blastn blastp blastx tblastn tblastx Database BR29 genome (DNA) BR32 genome (DNA) CD156 genome (DNA) FR13 Burkho genome (DNA) FR13 Magna genome (DNA) GY11 Burkho genome (DNA) GY11 Magna genome (DNA) PH14-rn Burkho genome (DNA) PH14-rn Magna genome (DNA) TH12-rn Burkho genome (DNA) TH12-rn Magna genome (DNA) TH16 genome (DNA) US71 genome (DNA) All genomes (DNA) ----------------------- BR29 cds (DNA) BR32 cds (DNA) CD156 cds (DNA) FR13 Burkho cds (DNA) FR13 Magna cds (DNA) GY11 Burkho cds (DNA) GY11 Magna cds (DNA) PH14-rn Burkho cds (DNA) PH14-rn Magna cds (DNA) TH12-rn Burkho cds (DNA) TH12-rn Magna cds (DNA) TH16 cds (DNA) US71 cds (DNA) All cDNAs (DNA) ----------------------- BR29 cds (prot) BR32 cds (prot) CD156 cds (prot) FR13 Burkho cds (prot) FR13 Magna cds (prot) GY11 Burkho cds (prot) GY11 Magna cds (prot) PH14-rn Burkho cds (prot) PH14-rn Magna cds (prot) TH12-rn Burkho cds (prot) TH12-rn Magna cds (prot) TH16 cds (prot) US71 cds (prot) All CDSs (prot)
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
