Mathematique Informatique et Genome

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[1] Bryson, K., Luck, M., Joy, M., Jones, D., Nicolas, P., Bessières, P. and Gibrat, J.-F. (2002). From GeneWeaver to Agmial. In Network Tools and Applications in Biology. Texte intégral.
[2] Durier, C., Hennequet, C. and Schaeffer, B. (2002). Techniques mathématiques pour l'industrie agroalimentaire. (J. Daudin and C. Duby, ed.), chapter Plans d'expériences. TEC & DOC.
[3] Gibrat, J.-F. and Marin, A. (2002b). Stratégies permettant d'assigner une fonction in silico aux séquences protéiques issues de projets de génomiques. In Dynamique du génome végétal, (J.-F. Maurot-Gaudry and J.-F. Briat, ed.). Editions-INRA. In press.
[4] Marin, A., Pothier, J., Zimmermann, K. and Gibrat, J.-F. (2002b). Protein threading statistics: An attempt to assess the significance of a fold assignment to a sequence. In Protein structure prediction: Bioinformatics approach, (I. F. Tsigelny, ed.), chapter 9, 227-262. International University Line, La Jolla, CA.
[5] Rodolphe, F. and Nicolas, P. (2002). Gene detection based on hidden markov models. In 7th World Congress on Genetics Applied to Livestock Production. Texte intégral.
[6] Garnier, J. and Berendsen, H. J. C. (2002). International unions concerned about biodata. Nature. 419 777. [ .pdf ]
[7] Gibrat, J.-F. and Marin, A. (2002a). Analyse informatique des données biologiques. BIOforum International Edition Francaise. 2 2-3.
[8] Gibrat, J.-F. and Marin, A. (2002c). In silico functional analysis. BIOforum International Edition Internationale. ? ?-? In press.
[9] Kloczkowski, A., Ting, K.-L., Jernigan, R.-L. and Garnier, J. (2002a). Combining the GOR algorithm with evolutionary information for protein secondary structure prediction from amino acid sequence. Proteins: Structure, Function, and Genetics. 49 154-166. [ http ]
[10] Kloczkowski, A., Ting, K.-L., Jernigan, R. and Garnier, J. (2002b). Protein secondary structure prediction based on the gor algorithm incorporating multiple sequence alignment information. Polymer. 43 441-449.
[11] Louis, A., Chiapello, H., Fabry, C., Ollivier, E. and Hénaut, A. (2002). Deciphering Arabidopsis thaliana gene neighborhoods through bibliographic co-citations. Computers and Chemistry. 26 511-519.
[12] Marin, A. and Gibrat, J.-F. (2002). Analyse fonctionnelle in silico. Medecine/Science. ? ?-? In press.
[13] Marin, A., Pothier, J., Zimmerman, K. and Gibrat, J.-F. (2002a). FROST: a filter based fold recognition method. Proteins: Struct. Funct. Genet. 49 493-509.
[14] Nicolas, P., Bize, L., Muri, F., Hoebeke, M., Rodolphe, F., Ehrlich, S., Prum, B. and Bessières, P. (2002). Mining bacillus subtilis chromosome heterogeneities using hidden Markov models. Nucl. Acids Res. 30 1418-1426.
[15] Nédellec, C. (2002). Bibliographical information extraction in genomics. IEEE Intelligent Systems: Trends & Controversies - Mining Information for Functional Genomics. 76-78.
[16] Pacheco-Trigon, S., Hennequet-Antier, C., Oudin, J.-F., Piumi, F., Renard, J.-P. and Duranthon, V. (2002). Molecular characterization of genomic activities at the onset of zygotic transcription in mammals. Biology of Reproduction. 67 1907-1918.
[17] Robin, S., Daudin, J.-J., Richard, H., Sagot, M.-F. and Schbath, S. (2002). Occurrence probability of structured motifs in random sequences. J. Comp. Biol. 761-773.
[18] Robson, B. and Garnier, J. (2002). The future of highly personalized health care. Stud. Health Technol. Inform. 80 163-174.
[19] Robin, S. (2002). A compound Poisson model for words occurrences in DNA sequences. J. Royal Statist. Soc., C series.  0. In Press.

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