Mathematique Informatique et Genome

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[1] Bessières, P., Bossy, R., Manine, A.-P., Alphonse, E. and Nédellec, C. (2006). Getting the unknown from the known in bacteria, and the role of text mining. In Proceedings of the Data and text mining in integrative biology workshop, associ ECML/PKDD, (M. H. et C. Nedellec, ed.), 67-72, Berlin, Allemagne. on-line proceedings. [ .pdf ]
[2] Hilario, M. and Nédellec, C. (septembre, 2006). Proceedings of the Data and text mining for integrative biology, associ ECML/PKDD, European Conference on Machine Learning. Springer Verlag, Bonn, Germany. [ .pdf ]
[3] Litrico, X., Fromion, V. and Scorletti, G. (2006a). Boundary control of hyperbolic conservation laws using a frequency domain approach. In Proc. IEEE Conf. on Decision and Control, volume 1(14), 5067-5072, San Diego, USA.
[4] Litrico, X., Fromion, V. and Scorletti, G. (2006b). Robust feedforward boundary control of hyperbolic conservation laws. In Proc. IEEE Conf. on Decision and Control, volume 1(14), 5311-5316, San Diego, USA.
[5] Manine, A.-P. (juillet, 2006). Application de l'apprentissage à l'extraction de connaissances à partir de notices bibliographiques en génomique. PhD thesis, Thèse d'informatique de l'Université d'Orsay.
[6] Nédellec, C., Bessières, P., Bossy, R., Kotoujansky, A. and Manine, A.-P. (2006). Annotation guidelines for machine learning-based named entity recognition in microbiology. In Proceedings of the Data and text mining in integrative biology workshop, joint to ECML/PKDD 2006, (M. H. et C. Nedellec (Eds), ed.), p. 40-54, Berlin, Allemagne. on-line proceedings. [ .pdf ]
[7] Nazarenko, A., Nédellec, C., Alphonse, E., Aubin, S., Hamon, T. and Manine, A.-P. (2006). Semantic annotation in the alvis project. In Proceedings of the International Workshop on Intelligent Information Access, (W. Buntine and H. T. (eds), ed.), Helsinki, Finland. on-line proceedings. [ http ]
[8] Nedellec, C. (2006a). Apprentissage automatique. In Encyclopédie Vuibert de l'Informatique et des syst Nhmes d'information, (J. A. et I. Wattiau, ed.), 1243-1253. Vuibert.
[9] Regad, L., Martin, J. and Camproux, A.-C. (2006). Identification of non random motifs in loops using a structural alphabet. In Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 1-9, Toronto, Ontario.
[10] Scorletti, G. and Fromion, V. (2006). Further results on the design of robust h feedforward controllers and filters. In Proc. IEEE Conf. on Decision and Control, pages??, San Diego, USA. publisher??
[11] Bryson, K., Loux, V., Bossy, R., Nicolas, P., Chaillou, S., van de Guchte, M., Penaud, S., Maguin, E., Hoebeke, M., Bessieres, P. and Gibrat, J. (2006). Agmial: implementing an annotation strategy for prokaryote genomes as a distributed system. Nucleic Acids Res. 34 3533-3545.
[12] El_Amri, C., Lacombe, C., Zimmermann, K., Ladram, A., Amiche, M., Nicolas, P. and Bruston, F. (2006). The plasticins : Membrane adsorption, lipid disorders, and biological activity. Biochemistry. 45 14285-14297.
[13] van de Guchte, M., Penaud, S., Grimaldi, C., Barbe, V., Bryson, K., Nicolas, P., Robert, C., Oztas, S., Mangenot, S., Couloux, A., Loux, V., Dervyn, R., Bossy, R., Bolotin, A., Batto, J., Walunas, T., Gibrat, J., Nhres, P. B., Weissenbach, J., Ehrlich, S. and Maguin, E. (2006). The complete genome sequence of lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Proc Natl Acad Sci U S A. 103 9274-9279.
[14] Garnier, J. (2006). Protein structure evolution, a challenge. IUPAB NEWS. 52 2-6.
[15] Lepage, E., Brinster, S., Caron, C., Ducroix-Crepy, C., Rigottier-Gois, L., Dunny, G., Hennequet-Antier, C. and Serror, P. (2006). Comparative genomic hybridization analysis of enterococcus faecalis: Identification of genes absent from food strains. Journal of Bacteriology. 188 6858-6868.
[16] Litrico, X., Fromion, V. and Baume, J.-P. (2006c). Tuning of robust distant downstream pi controllers for an irrigation canal pool: (II) Implementation issues. Journal of Irrigation and Drainage Engineering. 132(4) 359-368.
[17] Litrico, X. and Fromion, V. (2006a). Boundary control of linearized Saint-Venant equations oscill ating modes. Automatica. 42 (6) 967-972.
[18] Litrico, X. and Fromion, V. (2006b). H control of an irrigation canal pool with a mixed control politics. IEEE Transactions on Control Systems Technology. 14 99-111.
[19] Litrico, X. and Fromion, V. (2006c). Tuning of robust distant downstream pi controllers for an irrigation canal pool: (I)Theory. Journal of Irrigation and Drainage Engineering. 132(4) 369-379.
[20] Martin, J., Gibrat, J.-F. and Rodolphe, F. (2006). Analysis of an optimal hidden markov model for secondary structure prediction. BMC Structural Biology. 6 25.
[21] Matias, C., Schbath, S., Birmel Ni, E., Daudin, J.-J. and Robin, S. (2006). Network motifs: mean and variance for the count. REVSTAT. 4 31-51.
[22] Nicolas, P., Sun, F. and Li, L. M. (2006a). A model-based approach to selection of tag snps. BMC Bioinformatics. 7 303. [ http ]

[23] Nicolas, P., Tocquet, A.-S., Miele, V. and Muri, F. (2006b). A reversible jump Markov chain Monte Carlo algorithm for bacterial promoter motifs discovery. J Comput Biol. 13 (3) 651-667. [ http ]

[24] Nedellec, C. (2006b). Automatic metadata production. Content Mining Service, Newsletter technic. 2 0.
[25] Schibler, L., Roig, A., Mahe, M.-F., Laurent, P., Hayes, H., Rodolphe, F. and Cribiu, E.-P. (2006). High-resolution comparative mapping among man, cattle and mouse suggests a role for repeat sequences in mammalian genome evolution. BMC Genomics. 7 194.
[26] Sam, V., Tai, C.-H., Garnier, J., Gibrat, J.-F., Lee, B. and Munson, P. (2006). Roc and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification. BMC Bioinformatics. 7 206. [ http ]

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