Mathematique Informatique et Genome

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[1] Arlot, S., Blanchard, G. and Roquain, E. (2007). Resampling-based confidence regions and multiple tests for a correlated random vector. In Learning theory, volume 4539 of Lecture Notes in Comput. Sci., 127-141. Springer, Berlin.
[2] Aymerich, S., Goelzer, A. and Fromion, V. (2007). Transcriptional controls of the central carbon metabolism of Bacillus subtilis. (Y. Fujita, ed.), chapter 10, 205-229. Transworld Research Network.
[3] Azé, J., Gentils, L., Toffano-Nioche, C., Loux, V., Gibrat, J.-F., Bessières, P., Rouveirol, C., Poupon, A. and Froidevaux, C. (September 24-25, 2007). Towards a semi-automatic functional annotation tool based on decision tree techniques. In Proceedings of the International Workshop on Machine Learning in Systems Biology 2007 (MLSB'07), (F. d'Alch Ni-Buc and L. Wehenkel, ed.).
[4] Chiapello, H. and Rodolphe, F. (2007). Introduction to bioinformatics. In Functional Plant genomics, (J.-F. Morot-Gaudry, P. Lea, and J.-F. Briat, ed.), 53-55. INRA.
[5] Chiapello, H. (2007). Databases in biology. In Functional Plant genomics, (J.-F. Morot-Gaudry, P. Lea, and J.-F. Briat, ed.), 57-69. INRA.
[6] Duranthon, V., Leandri, R., Archilla, C., Vignal, C., Cabau, C., Peynot, N., Daniel, N., Chesné, P., Beaujean, N., Chavatte-Palmer, P. and Renard, J.-P. (2007). Rabbit as a model for embryo development. In International Meeting on Rabbit Biotechnology, 1 p., Jouy en Josas, France. Conférence invitée.
[7] Gibrat, J.-F. and Marin, A. (2007). Detecting protein function from genome sequences. In Functional plant genomics, (J.-F. Morot-Gaudry, P. Lea, and J.-F. Briat, ed.). Science Publishers, U.S.A.
[8] Litrico, X., Belaud, G. and Fromion, V. (December, 2007b). Stability analysis of automatic water level control gates in open-channels. In IEEE Conf. on Decision and Control, volume 1(14), 1591-1596, New-Orleans,USA. publisher??
[9] Leclerc, M., Sychova, L., Nalin, R., Marteau, P., Kazanov, M., Caron, C., Gelfand, M. and Dor Ni, J. (2007). New insights into the diversity and functions of human ileum mucosal microbiota: a metagenomic approach. To appear in PloS Biology.
[10] Martin, J., Regad, L. and Camproux, G., A.-C.and Nuel. (May-June 29-01, 2007a). Pattern statistics in sets of biological sequences. In Proceedings of Applied Stochastic Models and Data Analysis, 120, Chania, Greece. Courte communication-r Nisum Ni.
[11] Nicolas, P. and Chiapello, H. (2007). Gene prediction. In Functional Plant genomics, (J.-F. Morot-Gaudry, P. Lea, and J.-F. Briat, ed.), 71-85. INRA.
[12] Picard, F., Daudin, J.-J., Koskas, M., Schbath, S. and Robin, S. (2007). Assessing the exceptionalities of network motifs. In Journ Nies Ouvertes Biologie Informatique Math Nimatiques (JOBIM), (C. Brun and G. Didier, ed.), 235-241, Marseille, France.
[13] Robin, S., Schbath, S. and Vandewalle, V. (2007a). Statistical tests to compare motif count exceptionalities. In Journ Nies Ouvertes Biologie Informatique Math Nimatiques (JOBIM), (C. Brun and G. Didier, ed.), 57-62, Marseille, France.
[14] Scorletti, G., Bombois, X., Barenthin, M. and Fromion, V. (December, 2007). Improved efficient analysis for systems with uncertain parameters. In IEEE Conf. on Decision and Control, pages??, New-Orleans,USA. publisher??
[15] Bruston, F., Lacombe, C., Zimmermann, K., Piesse, C., Nicolas, P. and El_Amri, C. (2007). Structural malleability of plasticins: preorganized conformations in solution and relevance for antimicrobial activity. Biopolymers. 86(1) 42-56.
[16] Duchaud, E., Boussaha, M., Loux, V., Bernardet, J.-F., Michel, C., Kerouault, B., Mondot, S., Nicolas, P., Bossy, R., Caron, C., Bessières, P., Gibrat, J.-F., Claverol, S., Dumetz, F., Hénaff, M. L. and Benmansour, A. (2007). Complete genome sequence of the fish pathogen Flavobacterium psychrophilum. Nat Biotechnol. 25 763-769.
[17] Halpern, D., Chiapello, H., Schbath, S., Robin, S., Hennequet-Antier, C., Gruss, A. and El Karoui, M. (2007). Identification of dna motifs implicated in maintenance of bacterial core genomes by predictive modelling. PLoS Genetics. 3(9) e153. [ DOI ]
[18] Ibrahim, M., Nicolas, P., Nhres, P. B., Bolotin, A., Monnet, V. N. and Gardan, R. (2007). A genome-wide survey of short coding sequences in streptococci. Microbiology. 153 (Pt 11) 3631-3644. [ http ]
[19] Litrico, X., Fromion, V. and Scorletti, G. (2007a). Robust feedforward boundary control of hyperbolic conservation laws. Networks and Heterogeneous Media. 2 (4) 717-731.
[20] Martin, J., de Brevern, A.-G. and Camproux, A.-C. (Oct, 2007b). In silico local structure approach: a case study on outer membrane proteins. Proteins. 71(1) 92-109.
[21] Nicolas, P., Bessières, P., Ehrlich, S. D., Maguin, E. and van de Guchte, M. (2007a). Extensive horizontal transfer of core genome genes between two lactobacillus species found in the gastrointestinal tract. BMC Evol Biol. 7 (1) 141. [ http ]
[22] Nicolas, P., Kim, K.-M., Shibata, D. and Ni, S. T. (2007b). The stem cell population of the human colon crypt: analysis via methylation patterns. PLoS Comput Biol. 3 (3) e28. [ http ]
[23] Nedellec, C. (2007). Activité de mig en ia et bioinformatique. Bulletin AFIA (Association Française pour l'Intelligence Artificielle).  0.
[24] Robin, S., Schbath, S. and Vandewalle, V. (2007b). Statistical tests to compare motif count exceptionalities. BMC Bioinformatics. 8:84 1-20. [ http ]
[25] Roquain, E. and Schbath, S. (2007). Improved compound Poisson approximation for the number of occurrences of multiple words in a stationary Markov chain. Adv. Appl. Prob. 39 128-140.
[26] Stefanov, V., Robin, S. and Schbath, S. (2007). Waiting times for clumps of patterns and for structured motifs in random sequences. Discrete Applied Mathematics. 155(6-7) 868-880. [ DOI ]
[27] Yockteng, R., Marthey, S., Chiapello, H., Gendrault, A., Hood, M., Rodolphe, F., Devier, B., Wincker, P., Dossat, C. and Giraud, T. (2007). Expressed sequences tags of the anther smut fungus, microbotryum violaceum, identify mating and pathogenicity genes. BMC Genomics. 8(272) .

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