Mathematique Informatique et Genome

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[1] Aubin, S., Bessières, P., Bossy, R., Gillard, L., Jourde, J., Papazian, F., Veber, P. and Nedellec, C. (2009). Bioalvis ii, nlp-based semantic mining of literature on molecular biology of bacteria. In Workshop BioCreative II.5, (B. B. et al. (eds), ed.), 41, CNIO Madrid, Spain. on-line proceedings. [ .pdf ]
[2] Goelzer, A., Fromion, V. and Scorletti, G. (2009a). Cell design in bacteria as a convex optimization problem. In 48th IEEE Conf. on Decision and Control, 4517-4522, China. [ www: ]
[3] Kulkarni, V., Fromion, V., Alpcan, T. and Safonov, M. G. (2009). Loss of continuity in cellular networks under stabilizing transmit power control. In Proc. Annual Allerton Conference on Communication, Control, and Computing, 940-946, Allerton, USA.
[4] Litrico, X. and Fromion, V. (2009c). Modeling and control of hydrosystems. Springer Verlag.
[5] Nédellec, C., Nazarenko, A. and Bossy, R. (2009). Information extraction. In Handbook on Ontologies, (S. Staab and R. Studer, ed.), 663-685, International Handbooks Information System. Springer Verlag. [ http ]
[6] Rance, B., Gibrat, J. and Froidevaux, C. (July 20-22, 2009). An adaptive combination of matchers : application to the mapping of biological ontologies for genome annotation. In Lecture Notes in Computer Science, volume 5647, 113-126, Manchester-USA. Springer-Verlag. Conf Nirence invit Nie.
[7] Schbath, S. and Robin, R. (2009). How can pattern statistics can be useful for DNA motif discovery? (J. Glaz, I. Pozdnyakov, and S. Wallenstein, ed.). Statistics for Industry and Technology. Birkhauser.
[8] Barinov, A., Loux, V., Hammani, A., Nicolas, P., Langella, P., Ehrlich, S., Maguin, E. and van de Guchte, M. (2009). Prediction of surface exposed proteins in streptococcus pyogenes, with a potential application to other gram positive bacteria. Proteomics. (1) 61-73.
[9] Forquin, M., Duvergey, H., Proux, C., Loux, V., Mounier, J., Landaud, S., Coppee, J., Gibrat, J., Bonnarme, P., Martin-Verstraete, I. and Vallaeys, T. (2009). Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses. Appl Environ Microbiol. 75 6406-9.
[10] Goelzer, A., Charnomordic, B., Colombie, S., Fromion, V. and Sablayrolles, J. (2009b). Simulation and optimization software for alcoholic fermentation in winemaking conditions. Fodd Control. 20 (7) 635-642.
[11] Grelaud, A., Robert, C.-P., Marin, J.-M., Rodolphe, F. and Taly, J.-F. (2009). ABC likelihood-free methods for model choice in gibbs random fields. Bayesian Analysis. 4 (2) 317-336.
[12] Leandri, R., Archilla, C., Bui, L., Peynot, N., Liu, Z., Cabau, C., Chastellier, A., duranthon, V. and Renard, J. (2009). revealing the dynamics of gene expression during embryonic genome activation and first differentiation in the rabbit embryo with a dedicated array screening. Physiological Genomics. 36 (2) 98-113.
[13] Litrico, X. and Fromion, V. (2009a). Boundary control of hyperbolic conservation laws using a frequency domain approach. Automatica. 45(3) 647-656.
[14] Litrico, X. and Fromion, V. (2009b). Modal decomposition of linearized open channel flow. Networks and Heterogeneous Media. 4(2) 325-357.
[15] Manine, A., Alphonse, E. and Bessieres, P. (2009). Learning ontological rules to extract multiple relations of genic interactions from text. Internatinal Journal of Medical Informatics. 78(12) E31-E38.
[16] Nicolas, P., Leduc, A., Robin, S., Rasmussen, S., Jarmer, H. and Bessieres, P. (2009). Transcriptional landscape estimation from tiling array data using a model of signal shift and drift. Bioinformatics. 25 (18) 2341-2347.
[17] Schbath, S., Lacroix, V. and Sagot, M.-F. (2009). Assessing the exceptionality of coloured motifs in networks. EURASIP Journal on Bioinformatics and Systems Biology. ID 616234 1-9. [ DOI ]
[18] Touchon, M., Hoede, C., Tenaillon, O., Barbe, V., Baeriswyl, S., Bidet, P., Bingen, E., Bonacorsi, S., Bouchier, C., Bouvet, O., Calteau, A., Chiapello, H., Clermont, O., Cruveiller, S., Danchin, A., Diard, M., Dossat, C., El Karoui, M., Frapy, E., Garry, L., Ghigo, J.-M., Gilles, A.-M., Johnson, J., Le Bougunec, C., Lescat, M., Mangenot, S., Martinez-Jhanne, V., Matic, I., Nassif, X., Oztas, S., Petit, M.-A., Pichon, C., Rouy, Z., Saint Ruf, C., Schneider, D., Tourret, J., Vacherie, B., Vallenet, D., Medigue, C., Rocha, E. and Denamur, E. (2009). Organised genome dynamics in the escherichia coli species : the path to adaptation. Plos Genetics. 5(1) .
[19] Turenne, N. and Hue, I. (2009). A combinatorics-based data-mining approach to time-series microarray alignment. Vestnik VOGiS (Information Bulletin of Vavilov Society for Geneticists and Breeding Scientists). 13(1) 109-113.

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