Mathematique Informatique et Genome

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[1] Coste, F., Nédellec, C., Scheix, T. and Vert, J.-P. (2013). IA et Bioinformatique. In Encyclopédie de l'intelligence artificielle, (M. P. et al, ed.). Cépaduès. à paraitre.
[2] Dumazert, J., Stephan, J.-Y., Petit, M.-A. and Schbath, S. (2013). Assessing the enrichment significance of a possition weight matrix (PWM) along a DNA sequence. In Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), (C. Gaspin and e. Lindley, N., ed.), 25-34, Toulouse, France. Selected long paper.
[3] Garnier, J., Samson, F., Shrager, R., Gibrat, J.-F., Tai, C.-H., Sam, V. and Munson, P. J. (2013). A web site for detecting protein structural domain neighbours. In Biophysical Journal, volume 104 (2, Suppl. 1), 569a.
[4] Cailliez-Grimal, C., Chaillou, S., Anba-Mondoloni, J., Loux, V., Afzal, M. I., Rahman, A., Kergourlay, G., Champomier-Vergès, M.-C., Zagorec, M., Dalgaard, P., Leisner, J. J., Prévost, H., Revol-Junelles, A.-M. and Borges, F. (2013). Complete chromosome sequence of carnobacterium maltaromaticum lma 28. Genome announcements. 1 (1) . [ DOI | http ]
[5] Cousin, S., Clermont, D., Creno, S., Ma, L., Loux, V., Bizet, C. and Bouchier, C. (2013b). Draft genome sequence of lactobacillus pasteurii crbip 24.76t. Genome announcements. 1 (4) -.
[6] Cousin, S., Creno, S., Ma, L., Clermont, D., Loux, V., Bizet, C. and Bouchier, C. (2013a). Draft genome sequence of [i]lactobacillus hominis[/i] strain crbip 24.179 t , isolated from human intestine. Genome Announcements. 1 (4) 1. PMID = 23969062.
[7] Cousin, S., Loux, V., Ma, L., Creno, S., Clermont, D., Bizet, C. and Bouchier, C. (2013c). Draft genome sequences of lactobacillus equicursoris cip 110162 -f t and lactobacillus sp. strain crbip 24.137, isolated from thoroughbred racehorse feces and human urine, respectively. Genome Announcements. 1 (4) 1-2. PMID = 23969063.
[8] Fujiwara-Nagata, E., Chantry-Darmon, C., Bernardet, J. F., Eguchi, M., Duchaud, E. and Nicolas, P. (2013). Population structure of the fish pathogen flavobacterium psychrophilum at whole-country and model river levels in japan. Veterinary Research. 44 -.
[9] Falentin, H., Cousin, S., Clermont, D., Creno, S., Ma, F., Chuat, V., Loux, V., Rudiger, P., Bizet, C. and Bouchier, C. (2013). Draft genome sequences of five strains of lactobacillus acidophilus, strain cip 76.13 t , isolated from humans, strains cirm-bia 442 and cirm-bia 445, isolated from dairy products, and strains dsm 20242 and dsm 9126 of unknown origin. Genome announcements. 1 (4) e00658-13.
[10] Fromion, V., Leoncini, E. and Robert, P. (2013). Stochastic gene expression in cells: a point process approach. SIAM J. on Applied Mathematics. 73 195-211.
[11] Golik, W., Bossy, R., Ratkovic, Z. and Nédellec, C. (2013). Improving term extraction with linguistic analysis in the biomedical domain. Proceedings of the 14th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing'13), Special Issue of Research in Computing Science.  -. [ http ]
[12] Gibrat, J., Mariadassou, M., Boudinot, P. and Delmas, B. (2013). Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded rna and positive strand rna viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods. BMC Evol Biol. 13 154.
[13] Laalami, S., Bessières, P., Rocca, A., Zigand, L., Nicolas, P. and Putzer, H. (2013). Bacillus subtilis rnase y activity in vivo analysed by tiling microarrays. PLoS One. 8 (1) e54062. [ DOI | http ]
[14] Massip, F. and Arndt, P. F. (2013). Neutral evolution of duplicated dna: An evolutionary stick-breaking process causes scale-invariant behavior. Physical Review Letters. 110 (14) 148101.
[15] Mercati, O., Danckaert, A., André-leroux, G., Bellinzoni, M., Gouder, L., Watanabe, K., Shimoda, Y., Grailhe, R., De Chaumont, F., Bourgeron, T. and Cloëz-Tayarani, I. (2013). Contactin 4, -5 and -6 differentially regulate neuritogenesis while they display identical PTPRG binding sites. Biology open. 2(3) 324-334.
[16] Strepparava, N., Nicolas, P., Wahli, T., Segner, H. and Petrini, O. (2013). Molecular epidemiology of flavobacterium psychrophilum from swiss fish farms. Diseases of Aquatic Organisms. 105 (3) 203 - 210.
[17] Saraoui, T., Parayre-Breton, S., Guernec, G., Loux, V., Montfort, J., Le Cam, A., Boudry, G., Jan, G. and Falentin, H. (2013). A unique [i]in vivo[/i] experimental approach reveals metabolic adaptation of the probiotic [i]propionibacterium freudenreichii[/i] to the colon environment. BMC genomics. 14:911 15 p. PMID = 24365073.
[18] Tournier, L. and Chaves, M. (2013). Interconnection of asynchronous boolean networks, asymptotic and transient dynamics. Automatica. 49 (4) 884 - 893.

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