Mathematique Informatique et Genome

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[1] Coste, F., Nédellec, C., Schiex, T. and Vert, J.-P. (2014). Bioinformatique. In Panorama de l'Intelligence Artificielle, volume 3, . Cepadues Editions. [ .html ]
[2] Le Maréchal, C., Péton, V., Jardin, J., Briard-Bion, V., Deutsch, S.-M., Richoux, R., Loux, V., Foligné, B., Falentin, H. and Jan, G. (Juin 06-07, 2014). An integrative approach of propionibacterium freudenreichii immunomodulatory mechanisms. In 5th IDF Symposium on SCience and Technologie of Fermented Milk, Melbourne, AUS.
[3] Martinez, M., Alzari, P. M. and Andre-Leroux, G. (2014). Signalling mechanisms in prokaryotes. 383-408. Caister Academic Press, Norfolk GBR.
[4] MARIADASSOU, M., Ebert, D. and Pichon, S. (2014). The specificity - abundance relationship in microbial communities.
[5] Salaun, M.-C., Bugeon, J., Dameron, O., Fatet, I., A.; Hue, Hurtaud, C., Joret, L., Nédellec, C., Reichstadt, M., Vernet, J. and Le Bail, P.-Y. (2014). Les ontologies atol et eol, des outils en appui aux nouveaux challenges en production porcine. In Journées de la Recherche Porcine, volume 46, 281-285.
[6] Sanz, G., GIBRAT, J.-F. and Pajot, E. (2014). Olfactory receptor proteins. 47-68. Springer Science + Business Media Dordrecht 2014. [ DOI ]
[7] Schiex, T., Nédellec, C., Vert, J.-P. and Coste, F. (2014). Bioinformatique. Cepadues Editions, Toulouse FRA.
[8] Abi Khalil, E., Segond, D., Terpstra, T., ANDRE-LEROUX, G., Kallassy Awad, M., Lereclus, D., Bou-Abdallah, F. and Nielsen Leroux, C. (2014). Heme interplay between ilsa and isdc, two structurally different surface protein from bacillus cereus. Metallomics.  .
[9] Avendaño Herrera, R., Houel, A., Irgang, R., Bernardet, J. F., Godoy, M., Nicolas, P. and Duchaud, E. (2014). Introduction, expansion and coexistence of epidemic flavobacterium psychrophilum lineages in chilean fish farms. Veterinary microbiology. in press 1-9. [ DOI ]
[10] des Aunay, G. H., Slabbekoorn, H., Nagle, L., Floriane, P., Nicolas, P. and Draganoiu, T. I. (2014). Urban noise undermines female sexual preferences for low-frequency songs in domestic canaries. Animal Behaviour. 87 67-75.
[11] Bellinzoni, M., Ahouz, A., Miras, I., ANDRE-LEROUX, G., Magnet, S., Mukherjee, R., Shepard, W., Cole, S. T. and Alzari, P. M. (2014). Structural studies suggest a peptidoglycan hydrolase function for the mycobacterium tuberculosis tat-secreted protein rv2525c. Journal of Structural Biology.  .
[12] Bolotine, A., De Wouters, T., Schnupf, P., Bouchier, C., LOUX, V., Rhimi, M., Jamet, A., Dervyn, R., Boudebbouze, S., Blottiere, H., Sorokine, A., Snel, J., Cerf-Bensussan, N., Gaboriau-Routhiau, V., Van De Guchte, M. and Maguin, E. (2014). Genome sequence of candidatus arthromitus sp. strain SFB-mouse-NL, a commensal bacterium with a key role in postnatal maturation of gut immune functions. Genome announcements. 2 (4) 1-2.
[13] Carvalho, C., A.and Eozenou, Healey, G., Forde, N., Reinaud, P., Chebrout, M., Gall Pouget, L., Rodde, N., Lesage, A., Giraud-Delville, C., LEVEUGLE, M., Richard, C., Sheldon, I., Lonergan, P., Jolivet, G. and Sandra, O. (2014). Analysis of stat1 expression and biological activity reveals interferon-tau-dependent stat1-regulated socs genes in the bovine endometrium. Reproduction, Fertility and Development.  . [ DOI ]
[14] De Paepe, M., Hutinet, G., Son, O., Amarir-Bouhram, J., Schbath, S. and Petit, M.-A. (2014). Temperate phages acquire DNA from defective prophages by relaxed homologous recombination: The role of Rad52-like recombinases. PLOS Genetics. 10(3) e1004181. [ DOI ]
[15] El Kafsi, H., Binesse, J., Loux, V., Buratti, J., Boudebbouze, S., Dervyn, R., Kennedy, S., Galleron, N., Quinquis, B., Batto, J.-M., Moumen, B., Maguin, E. and Van De Guchte, M. (2014b). Lactobacillus delbrueckii ssp. lactis and ssp. bulgaricus: a chronicle of evolution in action. BMC genomics. 15 (1) 407. [ DOI ]
[16] El Kafsi, H., Binesse, J., Loux, V., Buratti, J., Boudebbouze, S., Dervyn, R., Hammani, A., Maguin, E. and Van De Guchte, M. (2014a). Genome sequence of lactobacillus delbrueckii subsp. lactis CNRZ327, a dairy bacterium with anti-inflammatory properties. Genome announcements. 2 (4) 1-2. [ http ]
[17] Falentin, H., Naquin, D., Loux, V., Barloy-Hubler, F., Loubière, P., Nouaille, S., Lavenier, D., Le Bourgeois, P., François, P., Schrenzel, J., Hernandez, D., Even, S. and Le Loir, Y. (2014). Genome sequence of lactococcus lactis subsp. lactis bv. diacetylactis ld61. Genome announcements. 2 (1) 1. [ DOI ]
[18] Juste, C., Kreil, D. P., Beauvallet, C., Guillot, A., Vaca, S., Carapito, C., Mondot, S., Sykacek, P., Sokol, H., Blon, F., Lepercq, P., Levenez, F., Valot, B., Carré, W., Loux, V., Pons, N., David, O., Schaeffer, B., Lepage, P., Martin, P., Monnet, V., Seksik, P., Beaugerie, L., Ehrlich, S., Gibrat, J.-F., Van Dorsselaer, A. and Dore, J. (2014). Bacterial protein signals are associated with crohnś disease. Gut. epub ahead of print. [ DOI ]
[19] Le Bail, P.-Y., Bugeon, J., Dameron, O., Fatet, A., Golik, W., Hocquette, J.-F., Hurtaud, C., Hue, C., I.and Jondreville, Joret, L., Salaun, M.-C., Vernet, J., Nédellec, C., Reichstadt, M. and Chemineau, P. (2014). Un langage de référence pour le phénotypage des animaux d'élevage : l'ontologie atol. INRA Productions Animales. 27 (3) 195-208.
[20] Muntel, J., Fromion, V., Goelzer, S., A.and Maaß, Mäder, U., Büttner, K., Hecker, M. and Becher, D. (2014). Comprehensive absolute quantification of the cytosolic proteome of bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (lc/mse). Molecular & Cellular Proteomics. 13 (4) 1008-1019. [ DOI ]
[21] Mirauta, B., Nicolas, P. and Richard, H. (2014). Parseq: reconstruction of microbial transcription landscape from rna-seq read counts using state-space models. Bioinformatics (Oxford, England). in press 1-8. [ DOI ]
[22] Mariadassou, M. and Pellay, F.-X. (2014). Identification of amino acids in mitochondrially encoded proteins that correlate with lifespan. Experimental gerontology. 1-6. [ DOI ]
[23] Maai, S., Wachlin, G., Bernhardt, J., Eymann, C., FROMION, V., Riedel, K., Becher, D. and Hecker, M. (2014). Highly precise quantification of protein molecules per cell during stress and starvation responses in bacillus subtilis. Molecular & cellular proteomics : MCP. 13 (9) 2260-76. [ DOI ]
[24] Nilsen, H., Sundell, K., Duchaud, E., Nicolas, P., Dalsgaard, I., Madsen, L., Aspán, A., Jansson, E., Colquhoun, D. J. and Wiklund, T. (2014). Multilocus sequence typing identifies epidemic clones of flavobacterium psychrophilum in nordic countries. Applied and environmental microbiology. 80 (9) 2728-36. [ DOI ]
[25] Pascault, N., LOUX, V., Derozier, S., Martin, V., Debroas, S., D.and Maloufi, Humbert, J. F. and Leloup, J. (2014). Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems. Genetica. 2014 (sept.) 1-11.
[26] Rocha, D., Billerey, C., Samson, F., Boichard, D. and Boussaha, M. (2014). Identification of the putative ancestral allele of bovine single-nucleotide polymorphisms. Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie. 1-4.
[27] Santos Rocha, C., Gomes-Santos, A., Garcias Moreira, T., de Azevedo, M., Diniz Luerce, T., Mariadassou, M., Longaray Delamare, A. P., Langella, P., Maguin, E., Azevedo, V., Caetano de Faria, A. M., Miyoshi, A. and Van De Guchte, M. (2014). Local and systemic immune mechanisms underlying the anti-colitis effects of the dairy bacterium lactobacillus delbrueckii. PloS one. 9 (1) 1-8. [ DOI ]

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