Intron pattern of the yeast Candida glabrata
The intron pattern was established on the basis of 105 introns detected in the coding
sequences of Candida glabrata.
Distances
| intron | S1 | S2 |
| min | 63 | 38 | 0 |
| max | 1297 | 1143 | 471 |
| med | 415 | 176 | 106 |
avg |
446 | 298 | 132 |
Logo representation of 5', BP and 3'
Frequences of splice sites
| 5' motifs | gtatgt | gtacgt | gtaagt | gtgagt | gtcagt | gtatgc | tgttaa | gtatgg | gtatga | gtatca | gtaggt |
| percentage | 76.2 | 7.6 | 5.7 | 1.9 | 1.9 | 1.9 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| BP motifs | tactaac | tacttat | tactaat | tgctaat | gactaac | ctctaac | aattaac | aactaac | atataac | tgctaac | tcctaac | atctaac |
| percentage | 66.7 | 5.7 | 4.8 | 3.8 | 3.8 | 3.8 | 3.8 | 2.9 | 1.9 | 1.0 | 1.0 | 1.0 |
| 3' motifs | cag | tag | aag | atg |
| percentage | 56.2 | 34.3 | 8.6 | 1.0 |
DNA logos were created using WEBLOGO version 2.8.1 (2004-10-18)