Intron pattern of the yeast Lachancea thermotolerans
The intron pattern was established on the basis of 335 introns detected in the coding
sequences of Lachancea thermotolerans.
Distances
| intron | S1 | S2 |
| min | 48 | 21 | 1 |
| max | 978 | 955 | 124 |
| med | 76 | 50 | 10 |
avg |
136 | 110 | 10 |
Logo representation of 5', BP and 3'
Frequences of splice sites
| 5' motifs | gtatgt | gtaagt | gtacgt | gtatga | gtatgc | gtatgg | gtttgt | gttcgt | gtgagt | gtaagg | gcatgt |
| percentage | 60.6 | 11.3 | 9.0 | 6.0 | 3.0 | 2.7 | 0.9 | 0.9 | 0.6 | 0.6 | 0.6 |
| BP motifs | tactaac | aactaac | tgctaac | cactaac | gactaac | tactgac | tactaat | ttctaac | tattaac | tcctaac | atctaac | aactgac | aactaat | ctctaac | agctaac |
| percentage | 58.5 | 7.8 | 5.4 | 5.1 | 4.2 | 3.0 | 2.7 | 2.4 | 2.4 | 1.2 | 0.9 | 0.9 | 0.9 | 0.6 | 0.6 |
| 3' motifs | cag | tag | aag | gag |
| percentage | 62.4 | 22.7 | 13.4 | 1.5 |
DNA logos were created using WEBLOGO version 2.8.1 (2004-10-18)