Intron pattern of the yeast Pichia pastoris
The intron pattern was established on the basis of 399 introns detected in the coding
sequences of Pichia pastoris.
Distances
| intron | S1 | S2 |
| min | 36 | 0 | 0 |
| max | 903 | 826 | 456 |
| med | 63 | 39 | 7 |
avg |
107 | 78 | 13 |
Logo representation of 5', BP and 3'
Frequences of splice sites
| 5' motifs | gtaagt | gtatgt | gtacgt | gtgagt | gtaagc | gtaggt | gtaaga | gttcgt | gtaatt | gtttga | gttagt | gtttgt | gttggt | gttatg | gtgggt | gtgcgt | gtatga | gtacga | gtaaag |
| percentage | 53.1 | 13.0 | 4.5 | 3.8 | 3.8 | 2.5 | 2.3 | 1.8 | 1.0 | 0.8 | 0.8 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
| BP motifs | tactaac | aactaac | cactaac | tgctaac | ttctaac | tattaac | tactgac | tactaat | atctaac | gactaac | agctaac | ctctaac | aactgac | gtctaac | tgctaat | tcctaac | cgctaac | cactgac | acctaac | ggctaac | aactaat |
| percentage | 46.1 | 9.8 | 6.5 | 6.0 | 5.5 | 4.3 | 3.3 | 3.0 | 2.5 | 1.8 | 1.8 | 1.5 | 1.3 | 1.0 | 0.8 | 0.8 | 0.8 | 0.8 | 0.8 | 0.5 | 0.5 |
| 3' motifs | tag | cag | aag | gag |
| percentage | 55.4 | 22.1 | 21.1 | 1.5 |
DNA logos were created using WEBLOGO version 2.8.1 (2004-10-18)