Intron pattern of the yeast Pichia pastoris

The intron pattern was established on the basis of 399 introns detected in the coding sequences of Pichia pastoris.

Distances

intronS1S2
min3600
max903826456
med63397
avg 1077813

Logo representation of 5', BP and 3'

Frequences of splice sites

5' motifsgtaagtgtatgtgtacgtgtgagtgtaagcgtaggtgtaagagttcgtgtaattgtttgagttagtgtttgtgttggtgttatggtgggtgtgcgtgtatgagtacgagtaaag
percentage53.113.04.53.83.82.52.31.81.00.80.80.50.50.50.50.50.50.50.5

BP motifstactaacaactaaccactaactgctaacttctaactattaactactgactactaatatctaacgactaacagctaacctctaacaactgacgtctaactgctaattcctaaccgctaaccactgacacctaacggctaacaactaat
percentage46.19.86.56.05.54.33.33.02.51.81.81.51.31.00.80.80.80.80.80.50.5

3' motifstagcagaaggag
percentage55.422.121.11.5


DNA logos were created using WEBLOGO version 2.8.1 (2004-10-18)