ID	1518043-4
sentence	We now report that the purified product of gerE (GerE) is a DNA-binding protein that adheres to the promoters for cotB and cotC.
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agents	agent(9)	agent(8)
targets	target(20)	target(22)
genic_interactions	genic_interaction(9,20)	genic_interaction(8,22)

ID	1537790-1
sentence	The spoIIG promoter is used by RNA polymerase containing sigma A (E sigma A), the primary form of RNA polymerase found in vegetative cells in Bacillus subtilis.
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agents	agent(9)
targets	target(1)
genic_interactions	genic_interaction(9,1)

ID	3104146-3
sentence	In the present report we describe a promoter that is adjacent to the rrnB region of the B. subtilis chromosome and is utilized in vitro and in vivo by E sigma 29.
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agents	agent(29)
targets	target(13)
genic_interactions	genic_interaction(29,13)

ID	7494476-1
sentence	The promoter (amyP) of the Bacillus subtilis alpha-amylase gene, which is recognized by E sigma A, has a three out of six match to the consensus promoter in both the -35 and -10 hexamers.
words	word(0,'The',0,2)	word(1,'promoter',4,11)	word(2,'amyP',14,17)	word(3,'of',20,21)	word(4,'the',23,25)	word(5,'Bacillus',27,34)	word(6,'subtilis',36,43)	word(7,'alpha-amylase',45,57)	word(8,'gene',59,62)	word(9,'which',65,69)	word(10,'is',71,72)	word(11,'recognized',74,83)	word(12,'by',85,86)	word(13,'E sigma A',88,96)	word(14,'has',99,101)	word(15,'a',103,103)	word(16,'three',105,109)	word(17,'out',111,113)	word(18,'of',115,116)	word(19,'six',118,120)	word(20,'match',122,126)	word(21,'to',128,129)	word(22,'the',131,133)	word(23,'consensus',135,143)	word(24,'promoter',145,152)	word(25,'in',154,155)	word(26,'both',157,160)	word(27,'the',162,164)	word(28,'-35',166,168)	word(29,'and',170,172)	word(30,'-10',174,176)	word(31,'hexamers',178,185)
agents	agent(13)
targets	target(7)
genic_interactions	genic_interaction(13,7)

ID	8169223-5
sentence	Transcription of cheV initiates from a sigma D-dependent promoter element both in vivo and in vitro, and expression of a cheV-lacZ fusion is completely dependent on sigD.
words	word(0,'Transcription',0,12)	word(1,'of',14,15)	word(2,'cheV',17,20)	word(3,'initiates',22,30)	word(4,'from',32,35)	word(5,'a',37,37)	word(6,'sigma D',39,45)	word(7,'dependent',47,55)	word(8,'promoter',57,64)	word(9,'element',66,72)	word(10,'both',74,77)	word(11,'in',79,80)	word(12,'vivo',82,85)	word(13,'and',87,89)	word(14,'in',91,92)	word(15,'vitro',94,98)	word(16,'and',101,103)	word(17,'expression',105,114)	word(18,'of',116,117)	word(19,'a',119,119)	word(20,'cheV',121,124)	word(21,'lacZ',126,129)	word(22,'fusion',131,136)	word(23,'is',138,139)	word(24,'completely',141,150)	word(25,'dependent',152,160)	word(26,'on',162,163)	word(27,'sigD',165,168)
agents	agent(6)	agent(27)
targets	target(2)	target(20)
genic_interactions	genic_interaction(6,2)	genic_interaction(27,20)

ID	8289242-7
sentence	spoVD transcription appears to occur from a promoter recognized by the sigma E form of RNA polymerase.
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agents	agent(11)
targets	target(0)
genic_interactions	genic_interaction(11,0)

ID	9006059-4
sentence	Two strong SpoIIID-binding sites were mapped in the spoVD promoter region, one overlapping the -35 region and the other encompassing the -10 region and the transcriptional start site.
words	word(0,'Two',0,2)	word(1,'strong',4,9)	word(2,'SpoIIID',11,17)	word(3,'binding',19,25)	word(4,'sites',27,31)	word(5,'were',33,36)	word(6,'mapped',38,43)	word(7,'in',45,46)	word(8,'the',48,50)	word(9,'spoVD',52,56)	word(10,'promoter',58,65)	word(11,'region',67,72)	word(12,'one',75,77)	word(13,'overlapping',79,89)	word(14,'the',91,93)	word(15,'-35',95,97)	word(16,'region',99,104)	word(17,'and',106,108)	word(18,'the',110,112)	word(19,'other',114,118)	word(20,'encompassing',120,131)	word(21,'the',133,135)	word(22,'-10',137,139)	word(23,'region',141,146)	word(24,'and',148,150)	word(25,'the',152,154)	word(26,'transcriptional',156,170)	word(27,'start',172,176)	word(28,'site',178,181)
agents	agent(2)
targets	target(9)
genic_interactions	genic_interaction(2,9)

ID	9287022-1
sentence	Bacillus subtilis Spo0A activates transcription from both sigmaA- and sigmaH-dependent promoters.
words	word(0,'Bacillus',0,7)	word(1,'subtilis',9,16)	word(2,'Spo0A',18,22)	word(3,'activates',24,32)	word(4,'transcription',34,46)	word(5,'from',48,51)	word(6,'both',53,56)	word(7,'sigmaA',58,63)	word(8,'and',66,68)	word(9,'sigmaH',70,75)	word(10,'dependent',77,85)	word(11,'promoters',87,95)
agents	agent(2)
targets	target(7)	target(9)
genic_interactions	genic_interaction(2,7)	genic_interaction(2,9)

ID	9748255-5
sentence	Both Spo0A~P and Spo0ABD stimulated transcription from the spoIIG promoter 10-fold more efficiently than Spo0A.
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agents	agent(1)	agent(3)	agent(14)
targets	target(8)
genic_interactions	genic_interaction(1,8)	genic_interaction(3,8)	genic_interaction(14,8)

ID	3036777-3
sentence	S1 nuclease mapping experiments showed that the sdh operon is transcribed from a sigma-43 promoter; the transcript starts at a guanosine residue 90 base pairs upstream from the first gene of the operon, sdhC.
words	word(0,'S1',0,1)	word(1,'nuclease',3,10)	word(2,'mapping',12,18)	word(3,'experiments',20,30)	word(4,'showed',32,37)	word(5,'that',39,42)	word(6,'the',44,46)	word(7,'sdh',48,50)	word(8,'operon',52,57)	word(9,'is',59,60)	word(10,'transcribed',62,72)	word(11,'from',74,77)	word(12,'a',79,79)	word(13,'sigma-43',81,88)	word(14,'promoter',90,97)	word(15,'the',100,102)	word(16,'transcript',104,113)	word(17,'starts',115,120)	word(18,'at',122,123)	word(19,'a',125,125)	word(20,'guanosine',127,135)	word(21,'residue',137,143)	word(22,'90',145,146)	word(23,'base',148,151)	word(24,'pairs',153,157)	word(25,'upstream',159,166)	word(26,'from',168,171)	word(27,'the',173,175)	word(28,'first',177,181)	word(29,'gene',183,186)	word(30,'of',188,189)	word(31,'the',191,193)	word(32,'operon',195,200)	word(33,'sdhC',203,206)
agents	agent(13)
targets	target(7)	target(33)
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ID	3123701-3
sentence	Transcription of amyE initiates in vitro from a promoter recognized by the major vegetative form of RNA polymerase, E sigma 43.
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agents	agent(18)
targets	target(2)
genic_interactions	genic_interaction(18,2)

ID	3919317-5
sentence	Here we report that several base substitutions in the ctc promoter differentially affect the utilization of the promoter by E sigma 37 or E sigma 29.
words	word(0,'Here',0,3)	word(1,'we',5,6)	word(2,'report',8,13)	word(3,'that',15,18)	word(4,'several',20,26)	word(5,'base',28,31)	word(6,'substitutions',33,45)	word(7,'in',47,48)	word(8,'the',50,52)	word(9,'ctc',54,56)	word(10,'promoter',58,65)	word(11,'differentially',67,80)	word(12,'affect',82,87)	word(13,'the',89,91)	word(14,'utilization',93,103)	word(15,'of',105,106)	word(16,'the',108,110)	word(17,'promoter',112,119)	word(18,'by',121,122)	word(19,'E sigma 37',124,133)	word(20,'or',135,136)	word(21,'E sigma 29',138,147)
agents	agent(19)	agent(21)
targets	target(9)
genic_interactions	genic_interaction(19,9)	genic_interaction(21,9)

ID	9658001-2
sentence	One class of Spo0A-activated promoter, which includes spoIIEp, is recognized by RNA polymerase associated with the primary sigma factor, sigma A (sigmaA); the second, which includes spoIIAp, is recognized by RNA polymerase associated with an early-sporulation sigma factor, sigma H (sigmaH).
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agents	agent(3)	agent(20)	agent(38)
targets	target(8)	target(26)
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