ID	10197994-8
sentence	At its peak, the concentration of sigmaF was some twofold higher than that of sigmaA.
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agents
targets
genic_interactions

ID	10220166-11
sentence	YhdN shows weak similarities to potassium ion channel proteins and YocK shows resemblance to the DnaK suppressor protein DksA.
words	word(0,'YhdN',0,3)	word(1,'shows',5,9)	word(2,'weak',11,14)	word(3,'similarities',16,27)	word(4,'to',29,30)	word(5,'potassium',32,40)	word(6,'ion',42,44)	word(7,'channel',46,52)	word(8,'proteins',54,61)	word(9,'and',63,65)	word(10,'YocK',67,70)	word(11,'shows',72,76)	word(12,'resemblance',78,88)	word(13,'to',90,91)	word(14,'the',93,95)	word(15,'DnaK',97,100)	word(16,'suppressor',102,111)	word(17,'protein',113,119)	word(18,'DksA',121,124)
agents
targets
genic_interactions

ID	10463184-1
sentence	The yfhP, yfhQ (mutY homologue), yfhS and yfhR (oxidoreductase homologue) genes, which are located upstream of the sspE locus, have been identified in the Bacillus subtilis genome.
words	word(0,'The',0,2)	word(1,'yfhP',4,7)	word(2,'yfhQ',10,13)	word(3,'mutY',16,19)	word(4,'homologue',21,29)	word(5,'yfhS',33,36)	word(6,'and',38,40)	word(7,'yfhR',42,45)	word(8,'oxidoreductase',48,61)	word(9,'homologue',63,71)	word(10,'genes',74,78)	word(11,'which',81,85)	word(12,'are',87,89)	word(13,'located',91,97)	word(14,'upstream',99,106)	word(15,'of',108,109)	word(16,'the',111,113)	word(17,'sspE',115,118)	word(18,'locus',120,124)	word(19,'have',127,130)	word(20,'been',132,135)	word(21,'identified',137,146)	word(22,'in',148,149)	word(23,'the',151,153)	word(24,'Bacillus',155,162)	word(25,'subtilis',164,171)	word(26,'genome',173,178)
agents
targets
genic_interactions

ID	10481082-2
sentence	The genes were designated tap1, flgD, flgE, orf4, motA, motB, fliL, fliM, fliY, orf10 and fliP.
words	word(0,'The',0,2)	word(1,'genes',4,8)	word(2,'were',10,13)	word(3,'designated',15,24)	word(4,'tap1',26,29)	word(5,'flgD',32,35)	word(6,'flgE',38,41)	word(7,'orf4',44,47)	word(8,'motA',50,53)	word(9,'motB',56,59)	word(10,'fliL',62,65)	word(11,'fliM',68,71)	word(12,'fliY',74,77)	word(13,'orf10',80,84)	word(14,'and',86,88)	word(15,'fliP',90,93)
agents
targets
genic_interactions

ID	10878124-3
sentence	Phylogenetic analyses of various sigma factor sequences from endospore-forming bacteria revealed that homologues of sigma(E), sigma(K) and sigma(G) clustered together regardless of genus, suggesting a common origin of sporulation sigma factors.
words	word(0,'Phylogenetic',0,11)	word(1,'analyses',13,20)	word(2,'of',22,23)	word(3,'various',25,31)	word(4,'sigma',33,37)	word(5,'factor',39,44)	word(6,'sequences',46,54)	word(7,'from',56,59)	word(8,'endospore-forming',61,77)	word(9,'bacteria',79,86)	word(10,'revealed',88,95)	word(11,'that',97,100)	word(12,'homologues',102,111)	word(13,'of',113,114)	word(14,'sigma',116,120)	word(15,'E',122,122)	word(16,'sigma',126,130)	word(17,'K',132,132)	word(18,'and',135,137)	word(19,'sigma',139,143)	word(20,'G',145,145)	word(21,'clustered',148,156)	word(22,'together',158,165)	word(23,'regardless',167,176)	word(24,'of',178,179)	word(25,'genus',181,185)	word(26,'suggesting',188,197)	word(27,'a',199,199)	word(28,'common',201,206)	word(29,'origin',208,213)	word(30,'of',215,216)	word(31,'sporulation',218,228)	word(32,'sigma',230,234)	word(33,'factors',236,242)
agents
targets
genic_interactions

ID	1906926-6
sentence	There is also substantial homology between the deduced products of tagB in the tagABC operon and tagF in the tagDEF operon.
words	word(0,'There',0,4)	word(1,'is',6,7)	word(2,'also',9,12)	word(3,'substantial',14,24)	word(4,'homology',26,33)	word(5,'between',35,41)	word(6,'the',43,45)	word(7,'deduced',47,53)	word(8,'products',55,62)	word(9,'of',64,65)	word(10,'tagB',67,70)	word(11,'in',72,73)	word(12,'the',75,77)	word(13,'tagABC',79,84)	word(14,'operon',86,91)	word(15,'and',93,95)	word(16,'tagF',97,100)	word(17,'in',102,103)	word(18,'the',105,107)	word(19,'tagDEF',109,114)	word(20,'operon',116,121)
agents
targets
genic_interactions

ID	2163341-1
sentence	The structural gene (sigK) for the mother-cell RNA polymerase sigma-factor sigma K in Bacillus subtilis is a composite of two truncated genes, named spoIVCB and spoIIIC, which are brought together by site-specific recombination during sporulation.
words	word(0,'The',0,2)	word(1,'structural',4,13)	word(2,'gene',15,18)	word(3,'sigK',21,24)	word(4,'for',27,29)	word(5,'the',31,33)	word(6,'mother-cell',35,45)	word(7,'RNA',47,49)	word(8,'polymerase',51,60)	word(9,'sigma-factor',62,73)	word(10,'sigma K',75,81)	word(11,'in',83,84)	word(12,'Bacillus',86,93)	word(13,'subtilis',95,102)	word(14,'is',104,105)	word(15,'a',107,107)	word(16,'composite',109,117)	word(17,'of',119,120)	word(18,'two',122,124)	word(19,'truncated',126,134)	word(20,'genes',136,140)	word(21,'named',143,147)	word(22,'spoIVCB',149,155)	word(23,'and',157,159)	word(24,'spoIIIC',161,167)	word(25,'which',170,174)	word(26,'are',176,178)	word(27,'brought',180,186)	word(28,'together',188,195)	word(29,'by',197,198)	word(30,'site-specific',200,212)	word(31,'recombination',214,226)	word(32,'during',228,233)	word(33,'sporulation',235,245)
agents
targets
genic_interactions

ID	2997585-2
sentence	The rpoD locus lay between aroD and lys, tightly linked to dnaE and inseparable from crsA.
words	word(0,'The',0,2)	word(1,'rpoD',4,7)	word(2,'locus',9,13)	word(3,'lay',15,17)	word(4,'between',19,25)	word(5,'aroD',27,30)	word(6,'and',32,34)	word(7,'lys',36,38)	word(8,'tightly',41,47)	word(9,'linked',49,54)	word(10,'to',56,57)	word(11,'dnaE',59,62)	word(12,'and',64,66)	word(13,'inseparable',68,78)	word(14,'from',80,83)	word(15,'crsA',85,88)
agents
targets
genic_interactions

ID	3086839-2
sentence	The complete nucleotide sequence of a 5 kb fragment including the entire rpoD gene revealed the presence of two other genes preceding rpoD in the order P23-dnaE-rpoD.
words	word(0,'The',0,2)	word(1,'complete',4,11)	word(2,'nucleotide',13,22)	word(3,'sequence',24,31)	word(4,'of',33,34)	word(5,'a',36,36)	word(6,'5',38,38)	word(7,'kb',40,41)	word(8,'fragment',43,50)	word(9,'including',52,60)	word(10,'the',62,64)	word(11,'entire',66,71)	word(12,'rpoD',73,76)	word(13,'gene',78,81)	word(14,'revealed',83,90)	word(15,'the',92,94)	word(16,'presence',96,103)	word(17,'of',105,106)	word(18,'two',108,110)	word(19,'other',112,116)	word(20,'genes',118,122)	word(21,'preceding',124,132)	word(22,'rpoD',134,137)	word(23,'in',139,140)	word(24,'the',142,144)	word(25,'order',146,150)	word(26,'P23',152,154)	word(27,'dnaE',156,159)	word(28,'rpoD',161,164)
agents
targets
genic_interactions

ID	3106319-2
sentence	One sigma factor, which appears 2 h after the initiation of sporulation, is sigma E (formerly sigma 29).
words	word(0,'One',0,2)	word(1,'sigma',4,8)	word(2,'factor',10,15)	word(3,'which',18,22)	word(4,'appears',24,30)	word(5,'2',32,32)	word(6,'h',34,34)	word(7,'after',36,40)	word(8,'the',42,44)	word(9,'initiation',46,55)	word(10,'of',57,58)	word(11,'sporulation',60,70)	word(12,'is',73,74)	word(13,'sigma E',76,82)	word(14,'formerly',85,92)	word(15,'sigma',94,98)	word(16,'29',100,101)
agents
targets
genic_interactions

ID	7494477-6
sentence	Two such amino acid substitutions were isolated in sigma A and one was isolated in sigma H.
words	word(0,'Two',0,2)	word(1,'such',4,7)	word(2,'amino',9,13)	word(3,'acid',15,18)	word(4,'substitutions',20,32)	word(5,'were',34,37)	word(6,'isolated',39,46)	word(7,'in',48,49)	word(8,'sigma A',51,57)	word(9,'and',59,61)	word(10,'one',63,65)	word(11,'was',67,69)	word(12,'isolated',71,78)	word(13,'in',80,81)	word(14,'sigma H',83,89)
agents
targets
genic_interactions

ID	7540694-1
sentence	Three genes called rocD, rocE and rocF were found near the rocR gene in B. subtilis.
words	word(0,'Three',0,4)	word(1,'genes',6,10)	word(2,'called',12,17)	word(3,'rocD',19,22)	word(4,'rocE',25,28)	word(5,'and',30,32)	word(6,'rocF',34,37)	word(7,'were',39,42)	word(8,'found',44,48)	word(9,'near',50,53)	word(10,'the',55,57)	word(11,'rocR',59,62)	word(12,'gene',64,67)	word(13,'in',69,70)	word(14,'B',72,72)	word(15,'subtilis',75,82)
agents
targets
genic_interactions

ID	7704261-1
sentence	As part of the Bacillus subtilis genome sequencing project, we have determined the complete nucleotide sequence of a skin element which is located between spoIVCB and spoIIIC.
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agents
targets
genic_interactions

ID	7797557-6
sentence	The hydropathy profiles of the dltB and dltD gene products suggest a transmembrane location for the former and an amino-terminal signal peptide for the latter.
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agents
targets
genic_interactions

ID	8752328-4
sentence	The gbsA and gbsB genes are transcribed in the same direction, are separated by a short intergenic region, and are likely to form an operon.
words	word(0,'The',0,2)	word(1,'gbsA',4,7)	word(2,'and',9,11)	word(3,'gbsB',13,16)	word(4,'genes',18,22)	word(5,'are',24,26)	word(6,'transcribed',28,38)	word(7,'in',40,41)	word(8,'the',43,45)	word(9,'same',47,50)	word(10,'direction',52,60)	word(11,'are',63,65)	word(12,'separated',67,75)	word(13,'by',77,78)	word(14,'a',80,80)	word(15,'short',82,86)	word(16,'intergenic',88,97)	word(17,'region',99,104)	word(18,'and',107,109)	word(19,'are',111,113)	word(20,'likely',115,120)	word(21,'to',122,123)	word(22,'form',125,128)	word(23,'an',130,131)	word(24,'operon',133,138)
agents
targets
genic_interactions

ID	9683503-1
sentence	tagA, tagD, and tuaA operons are responsible for the synthesis of cell wall anionic polymer, teichoic acid, and teichuronic acid, respectively, in Bacillus subtilis.
words	word(0,'tagA',0,3)	word(1,'tagD',6,9)	word(2,'and',12,14)	word(3,'tuaA',16,19)	word(4,'operons',21,27)	word(5,'are',29,31)	word(6,'responsible',33,43)	word(7,'for',45,47)	word(8,'the',49,51)	word(9,'synthesis',53,61)	word(10,'of',63,64)	word(11,'cell',66,69)	word(12,'wall',71,74)	word(13,'anionic',76,82)	word(14,'polymer',84,90)	word(15,'teichoic',93,100)	word(16,'acid',102,105)	word(17,'and',108,110)	word(18,'teichuronic',112,122)	word(19,'acid',124,127)	word(20,'respectively',130,141)	word(21,'in',144,145)	word(22,'Bacillus',147,154)	word(23,'subtilis',156,163)
agents
targets
genic_interactions

ID	9767589-2
sentence	The developmental programme of these two cells involves the compartmentalized activities of sigmaE in the larger mother cell and of sigmaF in the smaller prespore.
words	word(0,'The',0,2)	word(1,'developmental',4,16)	word(2,'programme',18,26)	word(3,'of',28,29)	word(4,'these',31,35)	word(5,'two',37,39)	word(6,'cells',41,45)	word(7,'involves',47,54)	word(8,'the',56,58)	word(9,'compartmentalized',60,76)	word(10,'activities',78,87)	word(11,'of',89,90)	word(12,'sigmaE',92,97)	word(13,'in',99,100)	word(14,'the',102,104)	word(15,'larger',106,111)	word(16,'mother',113,118)	word(17,'cell',120,123)	word(18,'and',125,127)	word(19,'of',129,130)	word(20,'sigmaF',132,137)	word(21,'in',139,140)	word(22,'the',142,144)	word(23,'smaller',146,152)	word(24,'prespore',154,161)
agents
targets
genic_interactions

ID	10503549-8
sentence	The results indicate an overlap between the sigmaB regulon and the sigmaF regulon, and the physiological implications of this overlap are discussed.
words	word(0,'The',0,2)	word(1,'results',4,10)	word(2,'indicate',12,19)	word(3,'an',21,22)	word(4,'overlap',24,30)	word(5,'between',32,38)	word(6,'the',40,42)	word(7,'sigmaB',44,49)	word(8,'regulon',51,57)	word(9,'and',59,61)	word(10,'the',63,65)	word(11,'sigmaF',67,72)	word(12,'regulon',74,80)	word(13,'and',83,85)	word(14,'the',87,89)	word(15,'physiological',91,103)	word(16,'implications',105,116)	word(17,'of',118,119)	word(18,'this',121,124)	word(19,'overlap',126,132)	word(20,'are',134,136)	word(21,'discussed',138,146)
agents
targets
genic_interactions

ID	1569009-3
sentence	We directly tested this hypothesis by performing in vitro transcription assays with reconstituted E sigma H and a set of plasmids containing the kinA, spo0F, and spo0A promoter regions.
words	word(0,'We',0,1)	word(1,'directly',3,10)	word(2,'tested',12,17)	word(3,'this',19,22)	word(4,'hypothesis',24,33)	word(5,'by',35,36)	word(6,'performing',38,47)	word(7,'in',49,50)	word(8,'vitro',52,56)	word(9,'transcription',58,70)	word(10,'assays',72,77)	word(11,'with',79,82)	word(12,'reconstituted',84,96)	word(13,'E sigma H',98,106)	word(14,'and',108,110)	word(15,'a',112,112)	word(16,'set',114,116)	word(17,'of',118,119)	word(18,'plasmids',121,128)	word(19,'containing',130,139)	word(20,'the',141,143)	word(21,'kinA',145,148)	word(22,'spo0F',151,155)	word(23,'and',158,160)	word(24,'spo0A',162,166)	word(25,'promoter',168,175)	word(26,'regions',177,183)
agents
targets
genic_interactions

ID	1784821-1
sentence	Two RNA polymerase sigma factors, sigma F and sigma E, are produced during the first two hours of endospore formation in Bacillus subtilis.
words	word(0,'Two',0,2)	word(1,'RNA',4,6)	word(2,'polymerase',8,17)	word(3,'sigma',19,23)	word(4,'factors',25,31)	word(5,'sigma F',34,40)	word(6,'and',42,44)	word(7,'sigma E',46,52)	word(8,'are',55,57)	word(9,'produced',59,66)	word(10,'during',68,73)	word(11,'the',75,77)	word(12,'first',79,83)	word(13,'two',85,87)	word(14,'hours',89,93)	word(15,'of',95,96)	word(16,'endospore',98,106)	word(17,'formation',108,116)	word(18,'in',118,119)	word(19,'Bacillus',121,128)	word(20,'subtilis',130,137)
agents
targets
genic_interactions

ID	2997585-5
sentence	Both dnaE and rpoD were transcribed in the same direction, counterclockwise on the chromosome.
words	word(0,'Both',0,3)	word(1,'dnaE',5,8)	word(2,'and',10,12)	word(3,'rpoD',14,17)	word(4,'were',19,22)	word(5,'transcribed',24,34)	word(6,'in',36,37)	word(7,'the',39,41)	word(8,'same',43,46)	word(9,'direction',48,56)	word(10,'counterclockwise',59,74)	word(11,'on',76,77)	word(12,'the',79,81)	word(13,'chromosome',83,92)
agents
targets
genic_interactions

ID	3134591-1
sentence	Nuclease S1 mapping was used to identify the transcription start points of the spoIIA and spoVA operons of Bacillus subtilis.
words	word(0,'Nuclease',0,7)	word(1,'S1',9,10)	word(2,'mapping',12,18)	word(3,'was',20,22)	word(4,'used',24,27)	word(5,'to',29,30)	word(6,'identify',32,39)	word(7,'the',41,43)	word(8,'transcription',45,57)	word(9,'start',59,63)	word(10,'points',65,70)	word(11,'of',72,73)	word(12,'the',75,77)	word(13,'spoIIA',79,84)	word(14,'and',86,88)	word(15,'spoVA',90,94)	word(16,'operons',96,102)	word(17,'of',104,105)	word(18,'Bacillus',107,114)	word(19,'subtilis',116,123)
agents
targets
genic_interactions

ID	3919021-2
sentence	We have now determined the 1809-base pair sequence of the dnaE coding region, which precedes rpoD and is transcribed in the same counterclockwise direction on the chromosome.
words	word(0,'We',0,1)	word(1,'have',3,6)	word(2,'now',8,10)	word(3,'determined',12,21)	word(4,'the',23,25)	word(5,'1809-base',27,35)	word(6,'pair',37,40)	word(7,'sequence',42,49)	word(8,'of',51,52)	word(9,'the',54,56)	word(10,'dnaE',58,61)	word(11,'coding',63,68)	word(12,'region',70,75)	word(13,'which',78,82)	word(14,'precedes',84,91)	word(15,'rpoD',93,96)	word(16,'and',98,100)	word(17,'is',102,103)	word(18,'transcribed',105,115)	word(19,'in',117,118)	word(20,'the',120,122)	word(21,'same',124,127)	word(22,'counterclockwise',129,144)	word(23,'direction',146,154)	word(24,'on',156,157)	word(25,'the',159,161)	word(26,'chromosome',163,172)
agents
targets
genic_interactions

ID	8169223-4
sentence	The predicted CheV gene product contains an amino-terminal CheW homologous domain linked to a response regulator domain of the CheY family, suggesting that either or both of these functions are duplicated.
words	word(0,'The',0,2)	word(1,'predicted',4,12)	word(2,'CheV',14,17)	word(3,'gene',19,22)	word(4,'product',24,30)	word(5,'contains',32,39)	word(6,'an',41,42)	word(7,'amino-terminal',44,57)	word(8,'CheW',59,62)	word(9,'homologous',64,73)	word(10,'domain',75,80)	word(11,'linked',82,87)	word(12,'to',89,90)	word(13,'a',92,92)	word(14,'response',94,101)	word(15,'regulator',103,111)	word(16,'domain',113,118)	word(17,'of',120,121)	word(18,'the',123,125)	word(19,'CheY',127,130)	word(20,'family',132,137)	word(21,'suggesting',140,149)	word(22,'that',151,154)	word(23,'either',156,161)	word(24,'or',163,164)	word(25,'both',166,169)	word(26,'of',171,172)	word(27,'these',174,178)	word(28,'functions',180,188)	word(29,'are',190,192)	word(30,'duplicated',194,203)
agents
targets
genic_interactions

ID	9324264-2
sentence	Among them are two sigma factors, sigmaE and sigmaK, and a DNA-binding protein, SpoIIID.
words	word(0,'Among',0,4)	word(1,'them',6,9)	word(2,'are',11,13)	word(3,'two',15,17)	word(4,'sigma',19,23)	word(5,'factors',25,31)	word(6,'sigmaE',34,39)	word(7,'and',41,43)	word(8,'sigmaK',45,50)	word(9,'and',53,55)	word(10,'a',57,57)	word(11,'DNA-binding',59,69)	word(12,'protein',71,77)	word(13,'SpoIIID',80,86)
agents
targets
genic_interactions

ID	10754235-4
sentence	In addition to others, it represses abrB and activates spoIIA and spoIIE transcription.
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agents
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ID	2468649-2
sentence	Transcription of these genes is mediated by RNA polymerase containing sigma G (E sigma G), the product of the sigG gene, which is itself expressed at stage III in the developing forespore.
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agents
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ID	3114422-6
sentence	One branch leads to expression of spoVA within the spore compartment, the other to expression of spoIIIC in the mother cell.
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agents
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ID	7679386-7
sentence	Such promoters depend on sigma factors (sigma D and sigma F, respectively) particularly similar to the deduced whiG gene product.
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agents
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ID	8320224-5
sentence	Reconstitution analysis of sigma E purified from the sporulating cell extracts and vegetative core RNA polymerase showed that sigma E recognizes the P2 promoter.
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agents
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ID	9004507-2
sentence	In some conditions, this gene can be transcribed by RNA polymerase associated with either sigma F or sigma G, in contrast to previous studies implying exclusive control by sigma G.
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agents
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ID	9271869-5
sentence	Two promoters are involved in transcriptional initiation, the sigma A-dependent upstream promoter contributes to the basal level during growth, whereas the sigma B-dependent downstream promoter is induced after different stress conditions.
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agents
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ID	2492118-3
sentence	A 14-kD protein was also discovered that changes the specificity of sigma K-containing RNA polymerase, greatly stimulating spoIVCB transcription and markedly repressing cotD transcription.
words	word(0,'A',0,0)	word(1,'14-kD',2,6)	word(2,'protein',8,14)	word(3,'was',16,18)	word(4,'also',20,23)	word(5,'discovered',25,34)	word(6,'that',36,39)	word(7,'changes',41,47)	word(8,'the',49,51)	word(9,'specificity',53,63)	word(10,'of',65,66)	word(11,'sigma K',68,74)	word(12,'containing',76,85)	word(13,'RNA',87,89)	word(14,'polymerase',91,100)	word(15,'greatly',103,109)	word(16,'stimulating',111,121)	word(17,'spoIVCB',123,129)	word(18,'transcription',131,143)	word(19,'and',145,147)	word(20,'markedly',149,156)	word(21,'repressing',158,167)	word(22,'cotD',169,172)	word(23,'transcription',174,186)
agents
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ID	3127379-1
sentence	Three promoters direct transcription of the sigA (rpoD) operon in Bacillus subtilis.
words	word(0,'Three',0,4)	word(1,'promoters',6,14)	word(2,'direct',16,21)	word(3,'transcription',23,35)	word(4,'of',37,38)	word(5,'the',40,42)	word(6,'sigA',44,47)	word(7,'rpoD',50,53)	word(8,'operon',56,61)	word(9,'in',63,64)	word(10,'Bacillus',66,73)	word(11,'subtilis',75,82)
agents
targets
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ID	7966271-1
sentence	Mother-cell-specific gene expression during sporulation of Bacillus subtilis is controlled by sigma E and sigma K RNA polymerases.
words	word(0,'Mother-cell-specific',0,19)	word(1,'gene',21,24)	word(2,'expression',26,35)	word(3,'during',37,42)	word(4,'sporulation',44,54)	word(5,'of',56,57)	word(6,'Bacillus',59,66)	word(7,'subtilis',68,75)	word(8,'is',77,78)	word(9,'controlled',80,89)	word(10,'by',91,92)	word(11,'sigma E',94,100)	word(12,'and',102,104)	word(13,'sigma K',106,112)	word(14,'RNA',114,116)	word(15,'polymerases',118,128)
agents
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ID	7592487-2
sentence	The promoter of this operon is recognized by RNA polymerase containing the sigma 54-like factor sigma L.
words	word(0,'The',0,2)	word(1,'promoter',4,11)	word(2,'of',13,14)	word(3,'this',16,19)	word(4,'operon',21,26)	word(5,'is',28,29)	word(6,'recognized',31,40)	word(7,'by',42,43)	word(8,'RNA',45,47)	word(9,'polymerase',49,58)	word(10,'containing',60,69)	word(11,'the',71,73)	word(12,'sigma',75,79)	word(13,'54-like',81,87)	word(14,'factor',89,94)	word(15,'sigma',96,100)	word(16,'L',102,102)
agents
targets
genic_interactions

ID	9422603-5
sentence	DNA sequences upstream of P1 were similar to consensus SigK-dependent promoters, while P2 and P3 were similar to consensus SigE-dependent promoters.
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agents
targets
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ID	9535080-4
sentence	The start point of transcription is preceded by potential promoter sequences for sigmaA, sigmaB and sigmaD.
words	word(0,'The',0,2)	word(1,'start',4,8)	word(2,'point',10,14)	word(3,'of',16,17)	word(4,'transcription',19,31)	word(5,'is',33,34)	word(6,'preceded',36,43)	word(7,'by',45,46)	word(8,'potential',48,56)	word(9,'promoter',58,65)	word(10,'sequences',67,75)	word(11,'for',77,79)	word(12,'sigmaA',81,86)	word(13,'sigmaB',89,94)	word(14,'and',96,98)	word(15,'sigmaD',100,105)
agents
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ID	2111808-2
sentence	One such factor, sigma D (sigma 28), is expressed during vegetative growth and has been implicated in the transcription of a regulon of genes expressed during exponential growth and the early stationary phase.
words	word(0,'One',0,2)	word(1,'such',4,7)	word(2,'factor',9,14)	word(3,'sigma D',17,23)	word(4,'sigma 28',26,33)	word(5,'is',37,38)	word(6,'expressed',40,48)	word(7,'during',50,55)	word(8,'vegetative',57,66)	word(9,'growth',68,73)	word(10,'and',75,77)	word(11,'has',79,81)	word(12,'been',83,86)	word(13,'implicated',88,97)	word(14,'in',99,100)	word(15,'the',102,104)	word(16,'transcription',106,118)	word(17,'of',120,121)	word(18,'a',123,123)	word(19,'regulon',125,131)	word(20,'of',133,134)	word(21,'genes',136,140)	word(22,'expressed',142,150)	word(23,'during',152,157)	word(24,'exponential',159,169)	word(25,'growth',171,176)	word(26,'and',178,180)	word(27,'the',182,184)	word(28,'early',186,190)	word(29,'stationary',192,201)	word(30,'phase',203,207)
agents
targets
genic_interactions

ID	8002610-3
sentence	The sigma B structural gene, sigB, lies in an operon with three other genes whose products have been shown to control sigma B activity in response to environmental stress. 
words	word(0,'The',0,2)	word(1,'sigma B',4,10)	word(2,'structural',12,21)	word(3,'gene',23,26)	word(4,'sigB',29,32)	word(5,'lies',35,38)	word(6,'in',40,41)	word(7,'an',43,44)	word(8,'operon',46,51)	word(9,'with',53,56)	word(10,'three',58,62)	word(11,'other',64,68)	word(12,'genes',70,74)	word(13,'whose',76,80)	word(14,'products',82,89)	word(15,'have',91,94)	word(16,'been',96,99)	word(17,'shown',101,105)	word(18,'to',107,108)	word(19,'control',110,116)	word(20,'sigma B',118,124)	word(21,'activity',126,133)	word(22,'in',135,136)	word(23,'response',138,145)	word(24,'to',147,148)	word(25,'environmental',150,162)	word(26,'stress',164,169)
agents
targets
genic_interactions
