-----FILE STRUCTURE-----

LLL challenge training data and the linguistic information are represented as follows. The file consists of the following fields (one field by line): 

  - ID: unique identifier of the Pubmed abstract that contains
    the sentence and the sentence position number
  - sentence: the original sentence
  - words: list of the sentence words
  - agents: list of the agents of the genic interactions
  - targets: list of the targets of the genic interactions
  - genic_interactions: list of the interactions (couples of agent-target) described in the sentence.
  - lemmas: list of identified canonical form of words 
    (infinitive form for verbs, singular form for nouns, pronouns, reference named entity for named entities...).
  - syntactic_relations: list of the syntactic relations in the
      sentence. See the Syntactic Analysis Guidelines for more information about this field


-----FIELD STRUCTURE-----

A tab separates each element of a field:

  ID
The ID field contains the abstract PubMed ID (PMID) which the sentence is
extracted from and it contains the sentence position number in this abstract.

ID (tabulation) 11011148-1

  SENTENCE
This field contains the sentence.

sentence (tabulation) ykuD was transcribed by SigK RNA polymerase from
T4 of sporulation.

  WORDS, AGENTS, TARGETS, GENIC_INTERACTIONS, LEMMAS, SYNTACTIC_RELATIONS
Other fields are organised according to the following format :

Field_Name (tabulation) predicate1(argument1_1,argument1_2,...)
(tabulation) predicate2(argument2_1,argument2_2,...) (tabulation)...

  EXAMPLE WORDS

words word(0,'ykuD',0,3) word(1,'was',5,7) word(2,'transcribed',9,19)
word(3,'by',21,22) word(4,'SigK',24,27) word(5,'RNA',29,31)
word(6,'polymerase',33,42) word(7,'from',44,47) word(8,'T4',49,50)
word(9,'of',52,53) word(10,'sporulation',55,65)

-----PREDICATE DESCRIPTION-----

  WORD
The predicate "word" refers to a word of the sentence and accepts four
arguments:

word(id_word,'string_word',start_word,end_word)

id_word: integer, unique word id
string_word: string, the actual word
start_word: integer, position of the first character in the sentence
(starting at 0)
end_word:integer, position of the last character in the sentence
(starting at 0)

  AGENT
The predicate "agent" refers to the agent of the genic interaction. It
accepts one argument:

agent(id_word)

id_word: integer, id of the word the agent refers to

  TARGET
The predicate "target" refers to the target of the genic interaction. It
accepts one argument:

target(id_word)

id_word: integer, id of the word the target refers to

  GENIC_INTERACTION 
The predicate "genic_interaction" refers to an
interaction between an agent and a target:

genic_interaction(id_word1,id_word2)

id_word1: integer, id of the word the agent refers to
id_word2: integer, id of the word the target refers to
  
  LEMMA
The predicate "lemma" refers to the normalized form (lemma) of a word.

lemma(id_word,'string_lemma')

id_word: integer, id of the word the lemma refers to
string_lemma:string, the lemma of the word

  SYNTACTIC_RELATION
The predicate "relation" refers to the normalized form (lemma) of a word.
See the Syntactic Analysis Guidelines for more information

relation('string_relation',id_word1,id_word2)

string_relation:string, the information contained in a syntactic relation
		(function of the relation:morpho-syntactic nature of the 2 words)
id_word1: integer, id of the first word (the head) linked by the relation 
id_word2: integer, id of the second word (the expension) linked by the relation 



-----EXAMPLE-----

ID	10747015-5

sentence	Localization of SpoIIE was shown to be dependent on the essential cell division protein FtsZ.
words		word(0,'Localization',0,11)	word(1,'of',13,14)	word(2,'SpoIIE',16,21)	word(3,'was',23,25)	word(4,'shown',27,31)	word(5,'to',33,34)	word(6,'be',36,37)	word(7,'dependent',39,47)	word(8,'on',49,50)	word(9,'the',52,54)	word(10,'essential',56,64)	word(11,'cell',66,69)	word(12,'division',71,78)	word(13,'protein',80,86)	word(14,'FtsZ',88,91)
lemmas	lemma(0,'localization')	lemma(1,'of')	lemma(2,'spoIIE')	lemma(3,'be')	lemma(4,'show')	lemma(5,'to')	lemma(6,'be')	lemma(7,'dependent')	lemma(8,'on')	lemma(9,'the')	lemma(10,'essential')	lemma(11,'cell')	lemma(12,'division')	lemma(13,'protein')	lemma(14,'ftsZ')	
syntactic_relations	relation('comp_of:N-N',0,2)	relation('mod_att:N-ADJ',13,10)	relation('mod_pred:N-ADJ',0,7)	relation('mod_att:N-N',14,13)	relation('mod_att:N-N',12,11)	relation('mod_att:N-N',13,12)	relation('comp_on:ADJ-N',7,14)	
agents	agent(14)
targets	target(2)
genic_interactions	genic_interaction(14,2)