+-------COMP:V-N(In)-------+           +-----COMP:N-N(of)-----+     
       |         +MOD_ATT+SUBJ:V-N+--OBJ:V-N--+              +MOD_ATT+     
       |         |       |        |           |              |       |     
 In nuclei , __NODE__ protein increases transcription of __NODE__ protein .
MOD_ATT:N-ADJ (protein,__NODE__)
COMP:V-N(In) (increase,nucleus)
SUBJ:V-N (increase,protein)
OBJ:V-N (increase,transcription)
COMP:N-N(of) (transcription,protein)
MOD_ATT:N-ADJ (protein,__NODE__)