Sophie's Home Page
| [33] | Reynaud-Bouret, P. and Schbath, S. (2010). Adaptive estimation for Hawkes' processes; Application to genome analysis. To appear in Annals of Statistics. |
| [32] | Schbath, S. and Hoebeke, M. (2010). R'MES: a tool to find motifs with a significantly unexpected frequency in biological sequences. To appear in Genome-scale Pattern Analysis in the Post-ENCODE Era. Elnitski, L., Piontkivska and H. and Welch, L. Eds. |
| [31] | Schbath, S. and Robin, R. (2009). Scan Statistics - Methods and Applications. (J. Glaz, I. Pozdnyakov, and S. Wallenstein, ed.), chapter How pattern statistics can be useful for DNA motif discovery? Statistics for Industry and Technology. Birkhauser. |
| [30] | Schbath, S., Lacroix, V. and Sagot, M.-F. (2009). Assessing the exceptionality of coloured motifs in networks. EURASIP Journal on Bioinformatics and Systems Biology. ID 616234 1-9. [ DOI ] |
| [29] | Mercier, R., Petit, M.-A., Schbath, S., Robin, S., El Karoui, M., Boccard, F. and Espeli, O. (2008). The MatP/matS site specific system organizes the Terminus region of the E. coli chromosome into a Macrodomain. Cell. 135 475-485. [ DOI ] |
| [28] | Touyar, N., Schbath, S., Cellier, D. and Dauchel, H. (2008). Poisson approximation for the number of repeats in a Markov chain model. J. Appl. Prob. 45 440-455. |
| [27] | Touzain, F., Schbath, S., Debled-Rennesson, I., Aigle, B., Leblond, P. and Kucherov, G. (2008). SIGffRid: a tool to search for σ factor binding sites in bacterial genomes using comparative approach and biologically driven statistics. BMC Bioinformatics. 9:73 1-23. [ http ] |
| [26] | Picard, F., Daudin, J.-J., Koskas, M., Schbath, S. and Robin, S. (2008). Assessing the exceptionality of network motifs. J. Comp. Biol. 15:1 1-20. [ http | .pdf ] |
| [25] | Halpern, D., Chiapello, H., Schbath, S., Robin, S., Hennequet-Antier, C., Gruss, A. and El Karoui, M. (2007). Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modelling. PLoS Genetics. 3(9) e153. [ DOI ] |
| [24] | Robin, S., Schbath, S. and Vandewalle, V. (2007). Statistical tests to compare motif count exceptionalities. BMC Bioinformatics. 8:84 1-20. [ http ] |
| [23] | Roquain, E. and Schbath, S. (2007). Improved compound Poisson approximation for the number of occurrences of multiple words in a stationary Markov chain. Adv. Appl. Prob. 39 1-13. [ .ps ] |
| [22] | Stefanov, V., Robin, S. and Schbath, S. (2007). Waiting times for clumps of patterns and for structured motifs in random sequences. Discrete Applied Mathematics. 155 868-880. [ DOI | .ps ] |
| [21] | Matias, C., Schbath, S., Birmelé, E., Daudin, J.-J. and Robin, S. (2006). Network motifs: mean and variance for the count. REVSTAT. 4 31-51. [ .pdf ] |
| [20] | Robin, S., Rodolphe, F. and Schbath, S. (2005). DNA, Words and Models. Cambridge University Press, English version of ADN, mots et modèles, BELIN 2003. [ http ] |
| [19] | Gusto, G. and Schbath, S. (2005). FADO: a statistical method to detect favored or avoided distances between motif occurrences using the hawkes' model. Statistical Applications in Genetics and Molecular Biology. 4 1. Article 24. [ .ps ] |
| [18] | Reinert, G., Schbath, S. and Waterman, M. (2005). Applied Combinatorics on Words. volume 105 of Encyclopedia of Mathematics and its Applications, chapter Statistics on Words with Applications to Biological Sequences. Cambridge University Press. [ http ] |
| [17] | Schbath, S. (2004). A la recherche de mots de fréquence exceptionnelle dans les génomes. In Images des Mathématiques, volume 3, 100-106. CNRS. |
| [16] | Robin, S., Rodolphe, F. and Schbath, S. (2003). ADN, mots et modèles. BELIN. |
| [15] | Schbath, S. (2003). Statistical methods in physical mapping. In Encyclopedia of the Human Genome, number 434 in Mathematical genetics. Nature Publishing Group. |
| [14] | Robin, S., Daudin, J.-J., Richard, H., Sagot, M.-F. and Schbath, S. (2002). Occurrence probability of structured motifs in random sequences. J. Comp. Biol. 9 761-773. [ .ps ] |
| [13] | Robin, S. and Schbath, S. (2001). Numerical comparison of several approximations of the word count distribution in random sequences. J. Comp. Biol. 8 349-359. [ .ps ] |
| [12] | Reinert, G., Schbath, S. and Waterman, M. (2000). Probabilistic and statistical properties of words. J. Comp. Biol. 7 1-46. [ .ps ] |
| [11] | Schbath, S., Bossard, N. and Tavaré, S. (2000). The effect of non-homogeneous clone length distribution on the progress of an STS mapping project. J. Comp. Biol. 7 47-58. [ .ps ] |
| [10] | Schbath, S. (2000). An overview on the distribution of word counts in Markov chains. J. Comp. Biol. 7 193-201. [ .ps ] |
| [9] | El Karoui, M., Biaudet, V., Schbath, S. and Gruss, A. (1999). Characteristics of Chi distribution on several bacterial genomes. Research in Microbiology. 150 579-587. |
| [8] | Reinert, G. and Schbath, S. (1999). Compound Poisson approximations for occurrences of multiple words. In Statistics in Genetics and Molecular Biology, (F. Seillier, ed.). IMS Lecture Notes-Monograph Series. Vol. 33. [ .ps ] |
| [7] | Schbath, S. and Bouvier, A. (1998). Finding words with unexpected frequencies in dna sequences. In Explorapedia of Statistical and Mathematical Techniques for use in Research and Technology. http://www.bioss.sari.ac.uk/smart/unix/intro/slides/home.htm. [ http ] |
| [6] | Reinert, G. and Schbath, S. (1998). Compound Poisson and Poisson process approximations for occurrences of multiple words in markov chains. J. Comp. Biol. 5 223-254. [ .ps ] |
| [5] | Schbath, S. (1997b). An efficient statistic to detect over- and under-represented words in DNA sequences. J. Comp. Biol. 4 189-192. [ .ps ] |
| [4] | Schbath, S. (1997a). Coverage processes in physical mapping by anchoring random clones. J. Comp. Biol. 4 61-82. [ .ps ] |
| [3] | Schbath, S. (1995a). Compound Poisson approximation of word counts in DNA sequences. ESAIM: Probability and Statistics. 1 1-16. (http://www.emath.fr/ps/). [ .ps ] |
| [2] | Schbath, S. (1995b). Étude asymptotique du nombre d'occurrences d'un mot dans une chaîne de Markov et application à la recherche de mots de fréquence exceptionnelle dans les séquences d'ADN. PhD thesis, Université René Descartes, Paris V. [ .ps ] |
| [1] | Schbath, S., Prum, B. and Turckheim, E. d. (1995). Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequences. J. Comp. Biol. 2 417-437. [ .ps ] |
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