File Sizes and File Counts
    - Total Files:
 
    - 715
 
    - Average File Size:
 
    - 187.7 lines
 
    - Average Revisions Per File:
 
    - 3.6
 


File Types
  
    
    
    
    
    
      
        | Type | 
        Files | 
        LOC | 
        LOC/File | 
      
    
    
      
        | Totals | 
        715 (100.0%) | 
        134196 (100.0%) | 
        187.6 | 
      
    
    
      
        | *.java | 
        396 (55.4%) | 
        75542 (56.3%) | 
        190.7 | 
      
      
        | *.gbk | 
        1 (0.1%) | 
        20716 (15.4%) | 
        20716.0 | 
      
      
        | *.js | 
        14 (2.0%) | 
        11394 (8.5%) | 
        813.8 | 
      
      
        | *.pdf | 
        1 (0.1%) | 
        6039 (4.5%) | 
        6039.0 | 
      
      
        | *.html | 
        80 (11.2%) | 
        5488 (4.1%) | 
        68.6 | 
      
      
        | *.sql | 
        41 (5.7%) | 
        2869 (2.1%) | 
        69.9 | 
      
      
        | *.pl | 
        11 (1.5%) | 
        2397 (1.8%) | 
        217.9 | 
      
      
        | *.tex | 
        5 (0.7%) | 
        2044 (1.5%) | 
        408.8 | 
      
      
        | *.xml | 
        13 (1.8%) | 
        1965 (1.5%) | 
        151.1 | 
      
      
        | *.in | 
        4 (0.6%) | 
        1728 (1.3%) | 
        432.0 | 
      
      
        | Others | 
        85 (11.9%) | 
        4014 (3.0%) | 
        47.2 | 
      
      
        | Non-Code Files | 
        64 (9.0%) | 
        0 (0.0%) | 
        0.0 | 
      
    
  
 
Largest Files
  
    
    
    
      
        | File | 
        Lines of Code | 
      
    
    
      
          BioTools/test_input/mycoplasmaGenitalium.gbk | 
        20716 | 
      
      
          Agmial2/pa_manager/web/js/dojo.js | 
        7445 | 
      
      
          doc/howToUseMetadata.pdf | 
        6039 | 
      
      
          Agmial2/ca_manager/src/cam/contigdb/ContigDB.java | 
        3448 | 
      
      
          Agmial2/ca_manager/src/cam/reader/MugenPanel.java | 
        3333 | 
      
      
          BioTools/src/biotools/util/PrintfFormat.java | 
        3258 | 
      
      
          Agmial2/pa_manager/src/pam/protdb/ProteinDB.java | 
        3229 | 
      
      
          Agmial2/ca_manager/src/cam/reader/EditFeature.java | 
        2619 | 
      
      
          Agmial2/pa_manager/src/pam/reader/SearchResults.java | 
        1127 | 
      
      
          doc/agmial_admin_guide.tex | 
        1118 | 
      
      
          Agmial2/common/src/agmial/registry/ManagerRegistryInterface.java | 
        991 | 
      
      
          Agmial2/pa_manager/sql/protdb_creation.sql | 
        975 | 
      
      
          Agmial2/pa_manager/web/web.xml.in | 
        902 | 
      
      
          Agmial2/pa_manager/src/pam/view/SearchParameterDisplayer.java | 
        871 | 
      
      
          Agmial2/pa_manager/src/pam/modele/Condition.java | 
        862 | 
      
      
          BioTools/test_input/cdd2_out.txt | 
        816 | 
      
      
          Agmial2/pa_manager/web/js/src/date.js | 
        761 | 
      
      
          Agmial2/ca_manager/src/cam/contigdb/CAMFeatureSchema.java | 
        700 | 
      
      
          Agmial2/pa_manager/src/pam/admin/ProteinSourceAdminImpl.java | 
        672 | 
      
      
          Agmial2/pa_manager/src/pam/controler/ListSearchParameter.java | 
        662 | 
      
    
  
 
Files With Most Revisions
  
    
    
    
      
        | File | 
        Revisions | 
      
    
    
      
          Agmial2/pa_manager/src/pam/reader/ProteinPanel.java | 
        31 | 
      
      
          Agmial2/pa_manager/build.xml | 
        27 | 
      
      
          Agmial2/pa_manager/src/pam/protdb/ProteinDB.java | 
        25 | 
      
      
          Agmial2/ca_manager/src/cam/reader/MugenPanel.java | 
        24 | 
      
      
          Agmial2/ca_manager/build.xml | 
        23 | 
      
      
          Agmial2/ca_manager/src/cam/contigdb/ContigDB.java | 
        20 | 
      
      
          Agmial2/ca_manager/src/cam/reader/EditFeature.java | 
        20 | 
      
      
          Agmial2/ca_manager/web/web.xml.in | 
        19 | 
      
      
          Agmial2/pa_manager/web/web.xml.in | 
        18 | 
      
      
          Agmial2/ca_manager/web/web.xml | 
        17 | 
      
      
          Agmial2/pa_manager/src/pam/admin/ProteinSourceAdminImpl.java | 
        15 | 
      
      
          Agmial2/ca_manager/src/cam/lifecycle/ContextListener.java | 
        15 | 
      
      
          Agmial2/pa_manager/src/pam/reader/SearchResults.java | 
        14 | 
      
      
          Agmial2/ca_manager/src/cam/reader/ContigStoreQueryImpl.java | 
        14 | 
      
      
          Agmial2/build.xml | 
        14 | 
      
      
          Agmial2/ca_manager/src/cam/control/UpdateCDSAction.java | 
        13 | 
      
      
          Agmial2/pa_manager/src/pam/admin/UpdateFunction.java | 
        12 | 
      
      
          Agmial2/pa_manager/src/pam/control/PAMControl.java | 
        11 | 
      
      
          Agmial2/ca_manager/src/cam/control/CAMControl.java | 
        11 | 
      
      
          Agmial2/agmial_directory/web/web.xml | 
        11 |