Total Lines Of Code: 3905 (2006-12-21 16:51)
Summary Period: 2004-09-29 to 2006-10-25
[root]/Agmial2/ca_manager/src/cam/admin
Total Lines Of Code:
3905 (2006-12-21 16:51)
| Author | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 129 (100.0%) | 5815 (100.0%) | 45.0 |
| vloux | 110 (85.3%) | 3211 (55.2%) | 29.1 |
| rbossy | 19 (14.7%) | 2604 (44.8%) | 137.0 |
Merge CedricSoubrie branch and HEAD
2 lines of code changed in:
BugFix
CAM :
contigDB
Gestion DataSource
Prepa release 20060317
227 lines of code changed in:
[#200] Export donn?es format tabul? CGView
Ajout properties pour affichage Lien CGView (cgview.enabled)
Creation CGViewPanel
+ Nettoyage (template)_project_properties
+ Generation auto liens du main_menu.html par build.xml
10 lines of code changed in:
Changement de start ? la vol?e (Affichage dans editFeature de tous les starts putatifs de l'ORF, transmission des annotations existantes). Debug
293 lines of code changed in:
Changement de start ? la vol?e (Affichage dans editFeature de tous les starts putatifs de l'ORF, transmission des annotations existantes).
282 lines of code changed in:
BugFixes
639 lines of code changed in:
CAM Summer Cleaning !
Various code cleaning (imports, externalisation of some parameters in properties files).
39 lines of code changed in:
CAM Summer Cleaning !
+ Database Pooling with apache dbcp (Database Connection Pools <http://jakarta.apache.org/commons/dbcp/>) served via jni to the servlet. Added a context.xmlfile with all the parameters for the connection.
+ Users and Roles are no longer stored in an xml file. Management via a dedicated database, served via jni to the servlets.
CAM refactoring :
moving all select/update/insert statement into contigdb package :
admin/ContigStoreAdminImpl.java OK (2)
admin/MonitorBatchTasks.java OK (1)(2)
admin/MonitorContigTasks.java OK (2)
admin/MonitorFeatureTasks.java OK (2)
admin/MonitorProjectTasks.java OK (2)
admin/MonitorTasks.java OK (2)
admin/ShowAddBatch.java OK (2)
admin/ShowAdminBatches.java OK (2)
admin/ShowUpdateContig.java OK (2)
admin/ShowUpdateProfile.java OK (2)
control/BatchActionMotivation.java OK(2)
control/BatchActionQueue.java OK(2)
control/BatchCalcAction.java OK(2)
control/ContigActionMotivation.java OK(2)
control/ContigActionQueue.java OK(2)
control/FeatureActionQueue.java OK(2)(3)
control/ProjectActionQueue.java OK(2)
control/ProjectMotivation.java OK(2)
control/QueryFeatureMotivation.java OK(2)
reader/ContigStoreQueryImpl.java OK
reader/EditFeature.java OK(2)
reader/MugenPanel.java TODO
reader/ProfileStoreQueryImpl.java OK(2)
(1) CAMActionList creation
(2) new methods in ContigDB
(3) CAMFeature creation
New policy for database accession :
All db accession is made via classes from the contigdb package.
For each object , two classes : CAMObject is the POJO
object.CAMOjectSchema is the Data Transfer Object and make the link
between the database and the POJO.
The CAMObjectSchema has at least two methods : add(CAMObjectSchema)
and update CAMObjectSchema();
ContigDB provide methods to interact with the object, mainly
getters/setters that call the corresponding methods in CAMObjectSchema.
--> reader/MugenPanel.java TODO
767 lines of code changed in:
GlobalPanel
MugenPanel Interface (admin & readOnly) Improved
Multiple bugfixes
362 lines of code changed in:
Ajout de la gestion des pseudogenes :
- Checkbox pseudo et text input pseudogene number dans ProteinPanel
- Changement des Interfaces de comm PAM/CAM -> wsdl ? regenerer et ? copier dans src_wsdl
14 lines of code changed in:
Nettoyage du code : imports, methodes deprecated ...
196 lines of code changed in:
Modifs sur en tete GPL
Correction du build.xml
Bugfix contextlistener.java
Ajout lien vers MuGenPanel dans ProteinPanel
19 lines of code changed in:
Preambule GPL
361 lines of code changed in:
Cassage de pipe (3)
Build.xml OK pour ca_manger et pa_manager.
Propage l'info conteue dans project_properties.
Fin (?) ajustements jwsdp1.5
Plus de startup_agmial/shutdown_agmial car nous deployons la webapp. A la place deploy-agmial/undeploy_agmial. La webapp est deployee -> il suffit de demarrer tomcat pour qu'elle soit dispo ...
0 lines of code changed in:
Initial revision
2604 lines of code changed in:
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