Module Agmial2/

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Summary Period: 2004-09-29 to 2006-11-18

Modules

[root]/Agmial2
     agmial_directory (2 files, 157 lines)
         src (0 files, 0 lines)
             agmial (0 files, 0 lines)
                 directory (2 files, 207 lines)
         web (7 files, 421 lines)
             agmial_user_guide (2 files, 155 lines)
             images (5 files, 0 lines)
             jsp (2 files, 96 lines)
     artemis_client (0 files, 0 lines)
         ARTEMIS (0 files, 0 lines)
             META-INF (0 files, 0 lines)
             collections (0 files, 0 lines)
             corba (0 files, 0 lines)
             diana (0 files, 0 lines)
                 components (0 files, 0 lines)
                 plot (0 files, 0 lines)
                 sequence (0 files, 0 lines)
             docs (0 files, 0 lines)
             etc (0 files, 0 lines)
             jalview (0 files, 0 lines)
             lib (0 files, 0 lines)
             uk (0 files, 0 lines)
                 ac (0 files, 0 lines)
                     sanger (0 files, 0 lines)
                         pathogens (0 files, 0 lines)
                             embl (0 files, 0 lines)
         src (0 files, 0 lines)
             agmial (0 files, 0 lines)
                 artemis (0 files, 0 lines)
         src_wsdl (0 files, 0 lines)
     ca_manager (5 files, 358 lines)
         sql (2 files, 430 lines)
         src (0 files, 0 lines)
             cam (0 files, 0 lines)
                 admin (21 files, 3905 lines)
                 contigdb (28 files, 6527 lines)
                 control (17 files, 2546 lines)
                 lifecycle (1 files, 133 lines)
                 reader (16 files, 7760 lines)
                 util (1 files, 42 lines)
         src_wsdl (1 files, 100 lines)
         web (19 files, 1638 lines)
             applets (1 files, 0 lines)
             images (5 files, 246 lines)
             jsp (1 files, 45 lines)
     common (2 files, 53 lines)
         src (0 files, 0 lines)
             agmial (0 files, 0 lines)
                 control (5 files, 650 lines)
                 registry (1 files, 991 lines)
                 util (5 files, 409 lines)
     pa_manager (3 files, 265 lines)
         sql (3 files, 976 lines)
             script_bd (15 files, 443 lines)
         src (0 files, 0 lines)
             pam (0 files, 0 lines)
                 admin (16 files, 2961 lines)
                 control (13 files, 2083 lines)
                 controler (5 files, 1644 lines)
                 database (3 files, 1283 lines)
                 lifecycle (1 files, 130 lines)
                 modele (7 files, 1461 lines)
                 protdb (38 files, 7424 lines)
                 reader (33 files, 8275 lines)
                 searchServlet (3 files, 807 lines)
                 util (1 files, 42 lines)
                 view (7 files, 2167 lines)
         src_wsdl (4 files, 135 lines)
         web (8 files, 1458 lines)
             images (22 files, 265 lines)
             js (2 files, 8104 lines)
                 src (1 files, 761 lines)
                     fx (3 files, 687 lines)
                     lfx (5 files, 1199 lines)
                     widget (2 files, 61 lines)
                         html (1 files, 582 lines)
             jsp (0 files, 0 lines)
             lib (2 files, 0 lines)
             reader (15 files, 266 lines)

Lines of Code

Total Lines Of Code: 342 (2006-12-21 16:51)

Authors

Most Recent Commits

vloux 2006-11-18 16:48

*** empty log message ***

1 lines of code changed in:

• Agmial2: template_project.properties (+1)

vloux 2006-10-30 15:50

Deployment : corrections in build.xml of common and biotools (properties inheritance).

137 lines of code changed in:

• Agmial2: build.xml (+137 -139)

vloux 2006-10-25 11:41

Merge CedricSoubrie branch and HEAD

4 lines of code changed in:

• Agmial2: build.xml (+4 -3)

vloux 2006-10-24 16:29

Merge CedricSoubrie branch and HEAD

3 lines of code changed in:

• Agmial2: build.xml (+3 -3)

vloux 2006-04-20 16:59

ConnectionPool :
- clean destroy

ActionsQueues/Motivations :
- sleepTime passed in constructor

ProteinDB/DAOs :
- statements not released properly causing locks

1 lines of code changed in:

• Agmial2: template_project.properties (+1), web_services.properties (del)

vloux 2006-02-28 16:10

[#200] Export donn?es format tabul? CGView
Ajout properties pour affichage Lien CGView (cgview.enabled)
Creation CGViewPanel
+ Nettoyage (template)_project_properties
+ Generation auto liens du main_menu.html par build.xml

39 lines of code changed in:

• Agmial2: template_project.properties (+39 -31)

vloux 2006-02-24 15:58

AGMIAL Feature #197
Gestion liste

1 lines of code changed in:

• Agmial2: build.xml (+1 -1)

vloux 2005-08-24 10:54

CAM Summer Cleaning !
Various code cleaning (imports, externalisation of some parameters in properties files).

11 lines of code changed in:

• Agmial2: template_web_services.properties (+5), web_services.properties (+6)

vloux 2005-08-08 16:11

Move project-specific paths to web.xml

7 lines of code changed in:

• Agmial2: template_project.properties (+7 -2)

vloux 2005-08-08 14:00

Fasta protein & gene export
+ FastaCreator : Create (multi) fasta (nucleic or proteic) from agmial_id and contig_accession.

1 lines of code changed in:

• Agmial2: .cvsignore (+1)

vloux 2005-06-28 17:26

Raw Files access :
+ Url taken from project properties
+ Need to put a .xml file in TOMCAT_HOME/conf/Catalina/localhost/ (documented in agmial_user_guide).

1 lines of code changed in:

• Agmial2: template_project.properties (+1)

vloux 2005-06-24 17:26

+ Transfer annotation from a paralog (for batch to batch manual transfer)

19 lines of code changed in:

• Agmial2: .classpath (+8 -6), .project (+6), web_services.properties (+5 -5)

vloux 2005-05-16 11:04

Int?gration de Jalview
HomologyPanel : construction de tableaux de r?sum? avec boite ? cocher
ProteinPanel : bouton de soumission "Jalview checked sequences"
+ JalviewLauncher : page de lancement de Jalview
+ FastaCreator : cr?e un fichier fasta regroupant les sequences des prots pass?es en parametre

6 lines of code changed in:

• Agmial2: build.xml (+1 -1), template_project.properties (+5)

rbossy 2005-04-22 11:53

Nettoyage des fichiers properties vierges

50 lines of code changed in:

• Agmial2: template_project.properties (+45 -71), template_web_services.properties (+5 -10)

rbossy 2005-04-21 18:04

Ajout des target: clean_pam, clean_all, redeploy_cam, redeploy_pam, redeploy_dir, redeploy_all

14 lines of code changed in:

• Agmial2: build.xml (+14)

vloux 2005-04-15 17:59

++ template_web_service.properties

19 lines of code changed in:

• Agmial2: organization.properties (del), template_organization.properties (del), template_web_services.properties (new 19)

vloux 2005-04-12 10:50

BugFix + Menage

36 lines of code changed in:

• Agmial2: .classpath (new 18), .cvsignore (new 1), .project (new 17)

vloux 2005-04-11 16:44

Merge de MugenPanel dans HEAD
Centralisation des chemins utilis?s dans MugenPanel et EditFeature
Modifs de build.xml, template_project.properties

12 lines of code changed in:

• Agmial2: template_project.properties (+12)

vloux 2005-04-11 15:05

Nettoyage du code : imports, methodes deprecated ...

5 lines of code changed in:

• Agmial2: web_services.properties (+5 -2)

vloux 2005-02-09 16:27

Static endpoint agmial_directory
Deploy

26 lines of code changed in:

• Agmial2: build.xml (+5 -1), template_project.properties (+21 -3)

(11 more)