Module Agmial2/pa_manager/src/pam/admin/

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Summary Period: 2004-09-29 to 2006-11-25

Modules

[root]/Agmial2/pa_manager/src/pam/admin

Lines of Code

Total Lines Of Code: 2961 (2006-12-21 16:51)

Authors

Most Recent Commits

vloux 2006-11-25 14:35

+ EC transfert : if descript contains (EC x.x.x.x) pattern, tansfer it to EC field

1 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+1 -1)

vloux 2006-10-25 11:41

Merge CedricSoubrie branch and HEAD

2 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: GlobalAdmin.java (+2 -2)

vloux 2006-03-16 13:01

Chgt wsdl
Pool connection sgbd
BugFix Search
Control

26 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminIF.java (+1 -1), ProteinSourceAdminImpl.java (+20 -12), UpdateFunction.java (+5 -5)

vloux 2006-03-07 15:27

[#197] Listes proteines
BugFix

10 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+10 -6)

vloux 2006-03-06 10:31

[#203] S?curit? : Single SignOn +Form based Login
PAM
[#213] Filtrer quote et retours chariots dans les formulaires
PAM

23 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+17 -2), UpdateAnnotation.java (+6 -1)

vloux 2006-02-27 14:41

AGMIAL Feature #197
Gestion liste : sauvegarde d'un resultat de recherche comme une nouvelle liste.

460 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+394 -324), UpdateLists.java (+66 -2)

vloux 2006-02-24 15:58

AGMIAL Feature #197
Gestion liste

693 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+493 -412), ShowAdminSources.java (+5 -1), UpdateAnnotation.java (+1 -1), UpdateFunction.java (+2 -2), UpdateLists.java (new 192)

vloux 2006-01-16 08:58

Changement de start ? la vol?e (Affichage dans editFeature de tous les starts putatifs de l'ORF, transmission des annotations existantes).

3 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+3 -2)

vloux 2005-09-01 17:00

PAM Summer cleaning

DBPooling with apache dbpc and jni.

PAM refactoring :
moving all select/update/insert statement into proteindb package :

reader/HomologyAlignPanel.java OK(1)(2)
reader/HomologyImagePanel.java OK(1)(2)
reader/HomologyPanel.java OK(1)(2)

reader/ProteinPanel.java OK (1),(2)

reader/QueryDataSets.java OK(1)
reader/QueryProteins.java OK(1)
reader/QueryProteinSources.java OK(1)

reader/SearchDataSets.java OK
reader/SearchProteinSources.javaOK
reader/SearchResults.java TODO (Need to reorganize the search ->
will be done at that moment)


admin/MonitorProteinRefTasks.java OK(1),(3)
admin/MonitorProteinTasks.java OK(1)
admin/MonitorTasks.java OK(1)
admin/RetireProteins.java OK(1)
admin/ShowAddProteins.java OK
admin/ShowRetireProteins.java OK

control/AfterActionMotivation.java OK
control/DetermineFunctionAction.java OK(1)
control/HomologyResultsMotivation.java OK(1)
control/NotifyFunctionMotivation.java OK
control/ParalogResultsMotivation.java DELETED
control/ProteinActionMotivation.java OK
control/ProteinActionQueue.java OK
control/ProteinRefActionQueue.java OK
control/SwissAnnotAction.java OK

(1)new methods in ProteinDB
(2) new DTO classes
(3) new classes in proteinDB

315 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: AddProteinSource.java (+5), AddProteins.java (+5), GlobalAdmin.java (+12 -18), MonitorProteinRefTasks.java (+33 -45), MonitorProteinTasks.java (+34 -46), MonitorTasks.java (+19 -23), ProteinSourceAdminImpl.java (+10 -4), RetireProteins.java (+21 -17), ShowAddProteinSource.java (+5), ShowAddProteins.java (+84 -89), ShowAdminSources.java (+5), ShowRetireProteins.java (+70 -75), UpdateAnnotation.java (+5), UpdateFunction.java (+7 -5)

vloux 2005-06-24 17:26

+ Transfer annotation from a paralog (for batch to batch manual transfer)

252 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: UpdateFunction.java (+252 -125)

vloux 2005-06-21 10:11

GlobalPanel
MugenPanel Interface (admin & readOnly) Improved
Multiple bugfixes

221 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: GlobalAdmin.java (new 207), ProteinSourceAdminIF.java (+1), ProteinSourceAdminImpl.java (+4 -1), ShowAdminSources.java (+9 -2)

vloux 2005-04-14 07:53

Ajout de la gestion des pseudogenes :
- Checkbox pseudo et text input pseudogene number dans ProteinPanel
- Changement des Interfaces de comm PAM/CAM -> wsdl ? regenerer et ? copier dans src_wsdl

47 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminIF.java (+1 -2), ProteinSourceAdminImpl.java (+30 -14), UpdateFunction.java (+16 -5)

vloux 2005-04-11 15:04

Nettoyage du code : imports, methodes deprecated ...

139 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: AddProteinSource.java (+6 -11), AddProteins.java (+13 -15), MonitorProteinRefTasks.java (+12 -8), MonitorProteinTasks.java (+12 -8), MonitorTasks.java (+12 -8), ProteinSourceAdminImpl.java (+19 -12), RetireProteins.java (+13 -12), ShowAddProteinSource.java (+6 -5), ShowAddProteins.java (+12 -11), ShowAdminSources.java (+6 -8), ShowRetireProteins.java (+12 -11), UpdateAnnotation.java (+7 -12), UpdateFunction.java (+9 -13)

vloux 2005-03-02 16:25

Modifs sur en tete GPL
Correction du build.xml
Bugfix contextlistener.java
Ajout lien vers MuGenPanel dans ProteinPanel

14 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: AddProteinSource.java (+1 -1), AddProteins.java (+1 -1), MonitorProteinRefTasks.java (+1 -1), MonitorProteinTasks.java (+1 -1), MonitorTasks.java (+1 -1), ProteinSourceAdminIF.java (+1 -1), ProteinSourceAdminImpl.java (+1 -1), RetireProteins.java (+1 -1), ShowAddProteinSource.java (+1 -1), ShowAddProteins.java (+1 -1), ShowAdminSources.java (+1 -1), ShowRetireProteins.java (+1 -1), UpdateAnnotation.java (+1 -1), UpdateFunction.java (+1 -1)

vloux 2005-02-10 10:27

Preambule GPL

266 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: AddProteinSource.java (+19), AddProteins.java (+19), MonitorProteinRefTasks.java (+19), MonitorProteinTasks.java (+19), MonitorTasks.java (+19), ProteinSourceAdminIF.java (+19), ProteinSourceAdminImpl.java (+19), RetireProteins.java (+19), ShowAddProteinSource.java (+19), ShowAddProteins.java (+19), ShowAdminSources.java (+19), ShowRetireProteins.java (+19), UpdateAnnotation.java (+19), UpdateFunction.java (+19)

vloux 2005-02-08 14:58

Cassage de pipe (5)

Build.xml OK pour ca_manger et pa_manager.
Propage l'info conteue dans project_properties.
Fin (?) ajustements jwsdp1.5
Plus de startup_agmial/shutdown_agmial car nous deployons la webapp. A la place deploy-agmial/undeploy_agmial. La webapp est deployee -> il suffit de demarrer tomcat pour qu'elle soit dispo ...

1 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: UpdateFunction.java (+1 -1)

vloux 2005-01-10 17:08

Bugfix

62 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: UpdateAnnotation.java (+32 -1), UpdateFunction.java (+30 -1)

rbossy 2004-09-29 16:40

Initial revision

1822 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: AddProteinSource.java (new 104), AddProteins.java (new 128), MonitorProteinRefTasks.java (new 194), MonitorProteinTasks.java (new 193), MonitorTasks.java (new 120), ProteinSourceAdminIF.java (new 14), ProteinSourceAdminImpl.java (new 419), RetireProteins.java (new 122), ShowAddProteinSource.java (new 58), ShowAddProteins.java (new 110), ShowAdminSources.java (new 63), ShowRetireProteins.java (new 94), UpdateAnnotation.java (new 102), UpdateFunction.java (new 101)