Module Agmial2/pa_manager/

back to main page

Summary Period: 2004-09-29 to 2006-11-22

Modules

[root]/Agmial2/pa_manager
     sql (3 files, 976 lines)
         script_bd (15 files, 443 lines)
     src (0 files, 0 lines)
         pam (0 files, 0 lines)
             admin (16 files, 2961 lines)
             control (13 files, 2083 lines)
             controler (5 files, 1644 lines)
             database (3 files, 1283 lines)
             lifecycle (1 files, 130 lines)
             modele (7 files, 1461 lines)
             protdb (38 files, 7424 lines)
             reader (33 files, 8275 lines)
             searchServlet (3 files, 807 lines)
             util (1 files, 42 lines)
             view (7 files, 2167 lines)
     src_wsdl (4 files, 135 lines)
     web (8 files, 1458 lines)
         images (22 files, 265 lines)
         js (2 files, 8104 lines)
             src (1 files, 761 lines)
                 fx (3 files, 687 lines)
                 lfx (5 files, 1199 lines)
                 widget (2 files, 61 lines)
                     html (1 files, 582 lines)
         jsp (0 files, 0 lines)
         lib (2 files, 0 lines)
         reader (15 files, 266 lines)

Lines of Code

Total Lines Of Code: 265 (2006-12-21 16:51)

Authors

Most Recent Commits

vloux 2006-11-22 17:29

- GlobalPanel : cosmetic fix.
- Added a new page "External Tools" with links to blast, artemis and metabolism comparison.

6 lines of code changed in:

• Agmial2/pa_manager: build.xml (+6 -4)

vloux 2006-11-16 16:46

Addition of a statistics page with pie charts (Function, Status, EC) made with JFreeChart.

4 lines of code changed in:

• Agmial2/pa_manager: build.xml (+4 -1)

vloux 2006-10-30 15:50

Deployment : corrections in build.xml of common and biotools (properties inheritance).

198 lines of code changed in:

• Agmial2/pa_manager: build.xml (+198 -200)

vloux 2006-10-25 11:41

Merge CedricSoubrie branch and HEAD

10 lines of code changed in:

• Agmial2/pa_manager: build.xml (+10 -10), pam_manager.properties (del), pam_manager.properties.in (del)

vloux 2006-04-04 15:04

Browse by Locus Tag

2 lines of code changed in:

• Agmial2/pa_manager: build.xml (+2 -1)

vloux 2006-03-16 13:01

Chgt wsdl
Pool connection sgbd
BugFix Search
Control

2 lines of code changed in:

• Agmial2/pa_manager: build.xml (+2 -2)

vloux 2006-03-07 17:24

MAJ presentation page accueil managers

3 lines of code changed in:

• Agmial2/pa_manager: build.xml (+3 -1)

vloux 2006-03-07 15:31

Fin nettoyage properties cam/pam
Fin nettoyage url en dur
Ajouts page par defaut erreurs 404,401,500 dans agmial_directory,pam,cam

[#213] Filtrer quote et retours chariots dans les formulaires
Filtre cot? client par javascript

70 lines of code changed in:

• Agmial2/pa_manager: build.xml (+70 -54)

vloux 2006-03-06 10:31

[#203] S?curit? : Single SignOn +Form based Login
PAM
[#213] Filtrer quote et retours chariots dans les formulaires
PAM

3 lines of code changed in:

• Agmial2/pa_manager: build.xml (+3 -1)

vloux 2005-09-01 17:00

PAM Summer cleaning

DBPooling with apache dbpc and jni.

PAM refactoring :
moving all select/update/insert statement into proteindb package :

reader/HomologyAlignPanel.java OK(1)(2)
reader/HomologyImagePanel.java OK(1)(2)
reader/HomologyPanel.java OK(1)(2)

reader/ProteinPanel.java OK (1),(2)

reader/QueryDataSets.java OK(1)
reader/QueryProteins.java OK(1)
reader/QueryProteinSources.java OK(1)

reader/SearchDataSets.java OK
reader/SearchProteinSources.javaOK
reader/SearchResults.java TODO (Need to reorganize the search ->
will be done at that moment)


admin/MonitorProteinRefTasks.java OK(1),(3)
admin/MonitorProteinTasks.java OK(1)
admin/MonitorTasks.java OK(1)
admin/RetireProteins.java OK(1)
admin/ShowAddProteins.java OK
admin/ShowRetireProteins.java OK

control/AfterActionMotivation.java OK
control/DetermineFunctionAction.java OK(1)
control/HomologyResultsMotivation.java OK(1)
control/NotifyFunctionMotivation.java OK
control/ParalogResultsMotivation.java DELETED
control/ProteinActionMotivation.java OK
control/ProteinActionQueue.java OK
control/ProteinRefActionQueue.java OK
control/SwissAnnotAction.java OK

(1)new methods in ProteinDB
(2) new DTO classes
(3) new classes in proteinDB

32 lines of code changed in:

• Agmial2/pa_manager: build.xml (+32 -17), build.xml.in (del)

vloux 2005-08-08 16:11

Move project-specific paths to web.xml

2 lines of code changed in:

• Agmial2/pa_manager: build.xml (+2)

vloux 2005-06-28 17:26

Raw Files access :
+ Url taken from project properties
+ Need to put a .xml file in TOMCAT_HOME/conf/Catalina/localhost/ (documented in agmial_user_guide).

1 lines of code changed in:

• Agmial2/pa_manager: build.xml (+1)

vloux 2005-06-24 17:26

+ Transfer annotation from a paralog (for batch to batch manual transfer)

4 lines of code changed in:

• Agmial2/pa_manager: build.xml (+4 -4)

vloux 2005-05-16 11:04

Int?gration de Jalview
HomologyPanel : construction de tableaux de r?sum? avec boite ? cocher
ProteinPanel : bouton de soumission "Jalview checked sequences"
+ JalviewLauncher : page de lancement de Jalview
+ FastaCreator : cr?e un fichier fasta regroupant les sequences des prots pass?es en parametre

2 lines of code changed in:

• Agmial2/pa_manager: build.xml (+2)

vloux 2005-04-15 17:59

++ template_web_service.properties

0 lines of code changed in:

• Agmial2/pa_manager: build.xml (-2)

vloux 2005-04-14 07:52

Ajout de la gestion des pseudogenes :
- Checkbox pseudo et text input pseudogene number dans ProteinPanel
- Changement des Interfaces de comm PAM/CAM -> wsdl ? regenerer et ? copier dans src_wsdl

3 lines of code changed in:

• Agmial2/pa_manager: build.xml (+3 -1)

vloux 2005-04-12 10:51

Bugfix

3 lines of code changed in:

• Agmial2/pa_manager: .cvsignore (new 3)

vloux 2005-04-12 09:29

Bugfix

1 lines of code changed in:

• Agmial2/pa_manager: build.xml (+1 -1)

vloux 2005-04-11 16:44

Merge de MugenPanel dans HEAD
Centralisation des chemins utilis?s dans MugenPanel et EditFeature
Modifs de build.xml, template_project.properties

1 lines of code changed in:

• Agmial2/pa_manager: build.xml (+1 -1)

vloux 2005-03-02 16:25

Modifs sur en tete GPL
Correction du build.xml
Bugfix contextlistener.java
Ajout lien vers MuGenPanel dans ProteinPanel

16 lines of code changed in:

• Agmial2/pa_manager: build.xml (+16 -12)

(8 more)