Module Agmial2/pa_manager/src/pam/reader/

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Summary Period: 2004-09-29 to 2006-12-21

Modules

[root]/Agmial2/pa_manager/src/pam/reader

Lines of Code

Total Lines Of Code: 8275 (2006-12-21 16:51)

Authors

Most Recent Commits

fpapazia 2006-12-21 16:51

correction (inherited from vloux)

3 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+3 -3)

vloux 2006-11-25 14:35

+ EC transfert : if descript contains (EC x.x.x.x) pattern, tansfer it to EC field

1 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+1 -1)

vloux 2006-11-22 18:10

- EasyQB : changed default limit for list (5000) and DOJOTable (100) both in DisplayerAdpater and web.xml.in
- ExternalTools : bugfix in the way multiple generated form are named

2 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ExternalTools.java (+2 -2)

vloux 2006-11-22 17:29

- GlobalPanel : cosmetic fix.
- Added a new page "External Tools" with links to blast, artemis and metabolism comparison.

173 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ExternalTools.java (new 166), GlobalPanel.java (+7 -4)

vloux 2006-11-16 17:39

Addition of a statistics page with pie charts (Function, Status, EC) made with JFreeChart : cosmetic fix

21 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: GlobalPanel.java (+21 -5)

vloux 2006-11-16 16:46

Addition of a statistics page with pie charts (Function, Status, EC) made with JFreeChart.

352 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: GlobalPanel.java (new 143), GlobalPieChart.java (new 209)

vloux 2006-11-14 17:41

Regression fix : Fasta export and List save

2 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: QueryProteins.java (+2 -2)

vloux 2006-10-25 11:41

Merge CedricSoubrie branch and HEAD

128 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: FindResult.java (new 126), ProteinPanel.java (+2 -8)

vloux 2006-05-29 16:06

Feature #246
Search by Interpro/Motif-Domain database Id or Name

49 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: SearchResults.java (+35 -6), SearchResultsPanel.java (+14 -1)

vloux 2006-05-03 17:42

#BugFix :
Paralog display (ParalogyTable // HomologyGraphic)
SerachAnnotationPanel : serach by gene of interest fixed.

452 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: HomologyGraphic.java (+18 -8), HomologyTable.java (+13 -15), JalviewLauncher.java (+9 -2), ParalogTable.java (del), ParalogyTable.java (new 302), ProteinPanel.java (+96 -3), SearchAnnotationPanel.java (+14 -13)

vloux 2006-04-20 16:59

ConnectionPool :
- clean destroy

ActionsQueues/Motivations :
- sleepTime passed in constructor

ProteinDB/DAOs :
- statements not released properly causing locks

1 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+1 -9)

vloux 2006-04-04 15:04

Browse by Locus Tag

760 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+12), QueryDataSets.java (+17 -3), QueryProteins.java (+22 -15), SearchAnnotationPanel.java (+326 -241), SearchResults.java (+146 -54), SearchResultsPanel.java (+237 -195)

vloux 2006-03-17 17:13

Bugfixes

4 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+4 -4)

vloux 2006-03-17 14:43

BugFix

13 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ClustalLauncher.java (+13 -6)

vloux 2006-03-17 14:20

BugFix

2 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: JalviewLauncher.java (+2 -1)

vloux 2006-03-16 13:01

Chgt wsdl
Pool connection sgbd
BugFix Search
Control

279 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: FastaCreator.java (+106 -96), HomologyAlignPanel.java (+6 -10), HomologyImagePanel.java (+11 -14), HomologyPanel.java (+11 -10), ProteinPanel.java (+41 -15), QueryProteins.java (+36 -11), SearchResults.java (+57 -23), SearchSQLQueryResults.java (+11 -4)

vloux 2006-03-07 15:31

Fin nettoyage properties cam/pam
Fin nettoyage url en dur
Ajouts page par defaut erreurs 404,401,500 dans agmial_directory,pam,cam

[#213] Filtrer quote et retours chariots dans les formulaires
Filtre cot? client par javascript

5 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+5 -3)

vloux 2006-03-06 10:31

[#203] S?curit? : Single SignOn +Form based Login
PAM
[#213] Filtrer quote et retours chariots dans les formulaires
PAM

88 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+88 -56)

vloux 2006-02-27 14:41

AGMIAL Feature #197
Gestion liste : sauvegarde d'un resultat de recherche comme une nouvelle liste.

711 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: QueryDataSets.java (+42 -35), SearchResults.java (+669 -462)

vloux 2006-02-24 15:58

AGMIAL Feature #197
Gestion liste

219 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+68 -9), QueryDataSets.java (+89 -62), QueryProteins.java (+61 -43), SearchResults.java (+1 -4)

(23 more)