Module Agmial2/pa_manager/src/pam/control/

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Summary Period: 2004-09-29 to 2006-11-25

Modules

[root]/Agmial2/pa_manager/src/pam/control

Lines of Code


Total Lines Of Code: 2083 (2006-12-21 16:51)

Authors

Author Changes Lines of Code Lines per Change
Totals 95 (100.0%) 3238 (100.0%) 34.0
rbossy 16 (16.8%) 1791 (55.3%) 111.9
vloux 77 (81.1%) 1399 (43.2%) 18.1
agmial 2 (2.1%) 48 (1.5%) 24.0

Most Recent Commits

vloux 2006-11-25 14:35

+ EC transfert : if descript contains (EC x.x.x.x) pattern, tansfer it to EC field

34 lines of code changed in:

vloux 2006-10-25 11:41

Merge CedricSoubrie branch and HEAD

16 lines of code changed in:

vloux 2006-04-20 17:33

ConnectionPool :
- clean destroy

14 lines of code changed in:

vloux 2006-04-20 16:59

ConnectionPool :
- clean destroy

ActionsQueues/Motivations :
- sleepTime passed in constructor

ProteinDB/DAOs :
- statements not released properly causing locks

74 lines of code changed in:

vloux 2006-03-16 13:01

Chgt wsdl
Pool connection sgbd
BugFix Search
Control

107 lines of code changed in:

vloux 2005-09-01 17:00

PAM Summer cleaning

DBPooling with apache dbpc and jni.

PAM refactoring :
moving all select/update/insert statement into proteindb package :

reader/HomologyAlignPanel.java OK(1)(2)
reader/HomologyImagePanel.java OK(1)(2)
reader/HomologyPanel.java OK(1)(2)

reader/ProteinPanel.java OK (1),(2)

reader/QueryDataSets.java OK(1)
reader/QueryProteins.java OK(1)
reader/QueryProteinSources.java OK(1)

reader/SearchDataSets.java OK
reader/SearchProteinSources.javaOK
reader/SearchResults.java TODO (Need to reorganize the search ->
will be done at that moment)


admin/MonitorProteinRefTasks.java OK(1),(3)
admin/MonitorProteinTasks.java OK(1)
admin/MonitorTasks.java OK(1)
admin/RetireProteins.java OK(1)
admin/ShowAddProteins.java OK
admin/ShowRetireProteins.java OK

control/AfterActionMotivation.java OK
control/DetermineFunctionAction.java OK(1)
control/HomologyResultsMotivation.java OK(1)
control/NotifyFunctionMotivation.java OK
control/ParalogResultsMotivation.java DELETED
control/ProteinActionMotivation.java OK
control/ProteinActionQueue.java OK
control/ProteinRefActionQueue.java OK
control/SwissAnnotAction.java OK

(1)new methods in ProteinDB
(2) new DTO classes
(3) new classes in proteinDB

681 lines of code changed in:

vloux 2005-04-14 07:52

Ajout de la gestion des pseudogenes :
- Checkbox pseudo et text input pseudogene number dans ProteinPanel
- Changement des Interfaces de comm PAM/CAM -> wsdl ? regenerer et ? copier dans src_wsdl

22 lines of code changed in:

agmial 2005-04-13 15:03

Added the FROST_CALC skill.
Added restrictions on motivations of protein calculations:
- setMinProteinSizeRestriction: motivation only for proteins larger than the given threshold
- setMaxProteinSizeRestriction: motivation only for proteins smaller than the given threshold
- setTargetSourceRestriction: motivation only for proteins from the given source
TODO: restriction on datasets

48 lines of code changed in:

vloux 2005-04-11 15:04

Nettoyage du code : imports, methodes deprecated ...

116 lines of code changed in:

vloux 2005-03-02 16:25

Modifs sur en tete GPL
Correction du build.xml
Bugfix contextlistener.java
Ajout lien vers MuGenPanel dans ProteinPanel

44 lines of code changed in:

vloux 2005-02-10 10:27

Preambule GPL

266 lines of code changed in:

vloux 2005-02-09 17:26

Static endpoint

23 lines of code changed in:

vloux 2005-02-08 14:58

Cassage de pipe (5)

Build.xml OK pour ca_manger et pa_manager.
Propage l'info conteue dans project_properties.
Fin (?) ajustements jwsdp1.5
Plus de startup_agmial/shutdown_agmial car nous deployons la webapp. A la place deploy-agmial/undeploy_agmial. La webapp est deployee -> il suffit de demarrer tomcat pour qu'elle soit dispo ...

2 lines of code changed in:

rbossy 2004-09-29 16:40

Initial revision

1791 lines of code changed in:

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