Module Agmial2/common/

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Summary Period: 2004-09-29 to 2006-10-30

Modules

[root]/Agmial2/common
     src (0 files, 0 lines)
         agmial (0 files, 0 lines)
             control (5 files, 650 lines)
             registry (1 files, 991 lines)
             util (5 files, 409 lines)

Lines of Code

Total Lines Of Code: 53 (2006-12-21 16:51)

Authors

Most Recent Commits

vloux 2006-10-30 15:50

Deployment : corrections in build.xml of common and biotools (properties inheritance).

44 lines of code changed in:

• Agmial2/common: build.xml (+44 -52)

vloux 2006-10-24 16:29

Merge CedricSoubrie branch and HEAD

4 lines of code changed in:

• Agmial2/common: build.xml (+4 -4)

vloux 2005-08-23 16:59

CAM Summer Cleaning !

+ Database Pooling with apache dbcp (Database Connection Pools <http://jakarta.apache.org/commons/dbcp/>) served via jni to the servlet. Added a context.xmlfile with all the parameters for the connection.

+ Users and Roles are no longer stored in an xml file. Management via a dedicated database, served via jni to the servlets.

CAM refactoring :
moving all select/update/insert statement into contigdb package :

admin/ContigStoreAdminImpl.java OK (2)
admin/MonitorBatchTasks.java OK (1)(2)
admin/MonitorContigTasks.java OK (2)
admin/MonitorFeatureTasks.java OK (2)
admin/MonitorProjectTasks.java OK (2)
admin/MonitorTasks.java OK (2)
admin/ShowAddBatch.java OK (2)
admin/ShowAdminBatches.java OK (2)
admin/ShowUpdateContig.java OK (2)
admin/ShowUpdateProfile.java OK (2)

control/BatchActionMotivation.java OK(2)
control/BatchActionQueue.java OK(2)
control/BatchCalcAction.java OK(2)
control/ContigActionMotivation.java OK(2)
control/ContigActionQueue.java OK(2)
control/FeatureActionQueue.java OK(2)(3)
control/ProjectActionQueue.java OK(2)
control/ProjectMotivation.java OK(2)
control/QueryFeatureMotivation.java OK(2)

reader/ContigStoreQueryImpl.java OK
reader/EditFeature.java OK(2)
reader/MugenPanel.java TODO
reader/ProfileStoreQueryImpl.java OK(2)


(1) CAMActionList creation
(2) new methods in ContigDB
(3) CAMFeature creation

New policy for database accession :
All db accession is made via classes from the contigdb package.

For each object , two classes : CAMObject is the POJO
object.CAMOjectSchema is the Data Transfer Object and make the link
between the database and the POJO.
The CAMObjectSchema has at least two methods : add(CAMObjectSchema)
and update CAMObjectSchema();
ContigDB provide methods to interact with the object, mainly
getters/setters that call the corresponding methods in CAMObjectSchema.


--> reader/MugenPanel.java TODO

0 lines of code changed in:

• Agmial2/common: build.xml (-1)

vloux 2005-04-12 10:50

BugFix + Menage

2 lines of code changed in:

• Agmial2/common: .cvsignore (new 2)

vloux 2005-02-02 17:05

JWSDP1.5

25 lines of code changed in:

• Agmial2/common: build.xml (+25 -2)

rbossy 2004-10-04 16:38

Ona nettoye startup_agmial et shutdown_agmial
Ca marche jusqu'a un certain point (agmial_directory + pages de gardes des modules).

5 lines of code changed in:

• Agmial2/common: build.xml (+5)

rbossy 2004-10-04 15:03

Ajout de src_wsdl (trop galere de le refire)
Fix des build.xml et des web.xml

1 lines of code changed in:

• Agmial2/common: build.xml (+1 -1)

rbossy 2004-09-29 16:40

Initial revision

32 lines of code changed in:

• Agmial2/common: build.xml (new 32)