Module BioTools/src/biotools/util/

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Summary Period: 2004-09-29 to 2006-10-31

Modules

[root]/BioTools/src/biotools/util

Lines of Code

Total Lines Of Code: 4032 (2006-12-21 16:51)

Authors

Most Recent Commits

vloux 2006-10-31 16:43

Various test backbones
Added a test (BioToolsTest) that check the avalaibility of the executables described in ./biotool.props
Changed build.xml to run the proper test.
ATTN problem with Ant classloading -> ant must be launched with -lib and path to ant-junit.jar and junit.jar OR , in case of eclipse, those two modules have to be added on the ant classpath

16 lines of code changed in:

• BioTools/src/biotools/util: BioResources.java (+16)

vloux 2005-09-01 17:00

PAM Summer cleaning

DBPooling with apache dbpc and jni.

PAM refactoring :
moving all select/update/insert statement into proteindb package :

reader/HomologyAlignPanel.java OK(1)(2)
reader/HomologyImagePanel.java OK(1)(2)
reader/HomologyPanel.java OK(1)(2)

reader/ProteinPanel.java OK (1),(2)

reader/QueryDataSets.java OK(1)
reader/QueryProteins.java OK(1)
reader/QueryProteinSources.java OK(1)

reader/SearchDataSets.java OK
reader/SearchProteinSources.javaOK
reader/SearchResults.java TODO (Need to reorganize the search ->
will be done at that moment)


admin/MonitorProteinRefTasks.java OK(1),(3)
admin/MonitorProteinTasks.java OK(1)
admin/MonitorTasks.java OK(1)
admin/RetireProteins.java OK(1)
admin/ShowAddProteins.java OK
admin/ShowRetireProteins.java OK

control/AfterActionMotivation.java OK
control/DetermineFunctionAction.java OK(1)
control/HomologyResultsMotivation.java OK(1)
control/NotifyFunctionMotivation.java OK
control/ParalogResultsMotivation.java DELETED
control/ProteinActionMotivation.java OK
control/ProteinActionQueue.java OK
control/ProteinRefActionQueue.java OK
control/SwissAnnotAction.java OK

(1)new methods in ProteinDB
(2) new DTO classes
(3) new classes in proteinDB

196 lines of code changed in:

• BioTools/src/biotools/util: BioArgumentException.java (+13 -8), BioConversionException.java (+17 -12), BioException.java (+18 -13), BioFormatException.java (+18 -12), BioParseException.java (+16 -11), BioStreamException.java (+13 -8), EOSException.java (+10 -5), NestedError.java (+49 -44), NestedException.java (+42 -35)

vloux 2005-08-09 11:22

Formatage code

3522 lines of code changed in:

• BioTools/src/biotools/util: BioArgumentException.java (+8 -8), BioBufferStream.java (+56 -56), BioConversionException.java (+12 -12), BioException.java (+15 -15), BioFileStream.java (+93 -98), BioFormatException.java (+12 -13), BioParseException.java (+11 -11), BioResources.java (+34 -43), BioStream.java (+11 -7), BioStreamException.java (+8 -8), EOSException.java (+5 -5), FileLog.java (+23 -25), Log.java (+8 -7), NestedError.java (+45 -46), NestedException.java (+35 -38), PrintfFormat.java (+3146 -3032)

vloux 2005-04-20 13:43

boolean NucleicFeature.existQualifier
Nettoyage du code.

75 lines of code changed in:

• BioTools/src/biotools/util: BioFileStream.java (+11 -1), PrintfFormat.java (+64 -12)

vloux 2005-04-11 14:43

Nettoyage du code : imports, methodes deprecated ...

3 lines of code changed in:

• BioTools/src/biotools/util: BioFileStream.java (+3 -2), BioStream.java (-2)

vloux 2005-04-05 09:03

Effac?s par erreur

3809 lines of code changed in:

• BioTools/src/biotools/util: BioArgumentException.java (new 18), BioBufferStream.java (new 83), BioConversionException.java (new 21), BioException.java (new 24), BioFileStream.java (new 171), BioFormatException.java (new 22), BioParseException.java (new 20), BioResources.java (new 104), BioStream.java (new 21), BioStreamException.java (new 18), EOSException.java (new 14), FileLog.java (new 45), Log.java (new 12), NestedError.java (new 69), NestedException.java (new 75), PrintfFormat.java (new 3092)

vloux 2005-04-04 15:26

Bugfixes

0 lines of code changed in:

• BioTools/src/biotools/util: BioArgumentException.java (del), BioBufferStream.java (del), BioConversionException.java (del), BioException.java (del), BioFileStream.java (del), BioFormatException.java (del), BioParseException.java (del), BioResources.java (del), BioStream.java (del), BioStreamException.java (del), EOSException.java (del), FileLog.java (del), Log.java (del), NestedError.java (del), NestedException.java (del), PrintfFormat.java (del)

rbossy 2004-09-29 16:40

Initial revision

3809 lines of code changed in:

• BioTools/src/biotools/util: BioArgumentException.java (new 18), BioBufferStream.java (new 83), BioConversionException.java (new 21), BioException.java (new 24), BioFileStream.java (new 171), BioFormatException.java (new 22), BioParseException.java (new 20), BioResources.java (new 104), BioStream.java (new 21), BioStreamException.java (new 18), EOSException.java (new 14), FileLog.java (new 45), Log.java (new 12), NestedError.java (new 69), NestedException.java (new 75), PrintfFormat.java (new 3092)