Module BioTools/

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Summary Period: 2004-09-29 to 2006-10-31

Modules

[root]/BioTools
     libs (1 files, 0 lines)
     scripts (1 files, 267 lines)
     src (0 files, 0 lines)
         biotools (2 files, 119 lines)
             calc (75 files, 6346 lines)
             general (2 files, 392 lines)
             nucleic (22 files, 4270 lines)
             protein (26 files, 3085 lines)
             util (16 files, 4032 lines)
         test (0 files, 0 lines)
             biotools (3 files, 145 lines)
                 calc (11 files, 1025 lines)
                 general (2 files, 210 lines)
                 nucleic (7 files, 1730 lines)
                 protein (2 files, 112 lines)
     test_input (20 files, 21806 lines)

Lines of Code

Total Lines Of Code: 197 (2006-12-21 16:51)

Authors

Most Recent Commits

vloux 2006-10-31 16:43

Various test backbones
Added a test (BioToolsTest) that check the avalaibility of the executables described in ./biotool.props
Changed build.xml to run the proper test.
ATTN problem with Ant classloading -> ant must be launched with -lib and path to ant-junit.jar and junit.jar OR , in case of eclipse, those two modules have to be added on the ant classpath

68 lines of code changed in:

• BioTools: biotools.props (+29 -41), build.xml (+39 -26)

vloux 2006-10-30 15:50

Deployment : corrections in build.xml of common and biotools (properties inheritance).

1 lines of code changed in:

• BioTools: build.xml (+1 -1)

vloux 2006-08-04 14:48

Biotools template fileCVS: ----------------------------------------------------------------------

31 lines of code changed in:

• BioTools: biotools.props (+31 -34)

vloux 2006-02-28 10:37

[#200] Export donn?es format tabul? CGView
Permettre l'export des donn?es au format CGView (http://wishart.biology.ualberta.ca/cgview/tab_input.html).
CGViewEntry + tests (basiques) associ?s

15 lines of code changed in:

• BioTools: build.xml (+15 -4)

vloux 2005-08-09 11:09

BioTools :
+ ClustalWCalc
Modifications Location

Tests :
SingleInOutTest
NucleicPackageTest
NucleicTest

15 lines of code changed in:

• BioTools: .cvsignore (new 4), biotools.props (+6 -1), build.xml (+5 -3)

vloux 2005-06-15 15:42

BioTools :
+ NucleicFeatureLocation gere les localisations de type join(www..xxx,yy..zzz)
+ Test unitaires :
- GenBankTextTest
- SequinEntryTest
- NucleicFeatureLocationTest
regroup?s sous la classe NucleicPackageTest qui est une suite des test precedents.

45 lines of code changed in:

• BioTools: build.xml (+45 -35)

vloux 2005-04-22 08:38

SequinEntry :
(+) avec/sans generation a la volee du qualifier gene
(+) avec/sans les qualifiers valides

18 lines of code changed in:

• BioTools: build.xml (+18 -5)

vloux 2005-04-11 11:17

Sequin export
Junit test for SequinEntry

1 lines of code changed in:

• BioTools: build.xml (+1 -1)

agmial 2005-04-08 17:58

Parametres de FROST ... + petite boulette dans SIGSEQCalc

6 lines of code changed in:

• BioTools: biotools.props (+6)

vloux 2005-04-05 09:02

effac?s par erreur

1 lines of code changed in:

• BioTools: build.xml (+1 -1)

rbossy 2004-09-29 16:40

Initial revision

148 lines of code changed in:

• BioTools: README (new 15), biotools.props (new 104), build.xml (new 29)