Module BioTools/src/biotools/calc/

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Summary Period: 2004-09-29 to 2006-10-31

Modules

[root]/BioTools/src/biotools/calc

Lines of Code


Total Lines Of Code: 6346 (2006-12-21 16:51)

Authors

Author Changes Lines of Code Lines per Change
Totals 388 (100.0%) 14937 (100.0%) 38.4
vloux 311 (80.2%) 9505 (63.6%) 30.5
rbossy 68 (17.5%) 5160 (34.5%) 75.8
agmial 9 (2.3%) 272 (1.8%) 30.2

Most Recent Commits

vloux 2006-10-31 16:43

Various test backbones
Added a test (BioToolsTest) that check the avalaibility of the executables described in ./biotool.props
Changed build.xml to run the proper test.
ATTN problem with Ant classloading -> ant must be launched with -lib and path to ant-junit.jar and junit.jar OR , in case of eclipse, those two modules have to be added on the ant classpath

9 lines of code changed in:

vloux 2006-02-03 17:43

[#189]

Tests Biotools (encore du chemin ...)
Ajout fichiers input
Extension tests

Logging avec log4j

115 lines of code changed in:

vloux 2006-02-01 16:39

Ajout Psort (Feature Request #188).
Modifs BioTools
Test basique sur sortie "long" Gram+ et Gram-

357 lines of code changed in:

vloux 2005-10-20 17:01

BugFixes :
#130 Bug Parsing CDD
#132 Passage ? Interpro V4

Ajouts de tests (en cours):
CDD
Interpro
memsat
psort

321 lines of code changed in:

vloux 2005-09-14 15:41

Package Reorganisation :
Tests in a separate folder but still belong to the same package.

0 lines of code changed in:

vloux 2005-09-01 17:00

PAM Summer cleaning

DBPooling with apache dbpc and jni.

PAM refactoring :
moving all select/update/insert statement into proteindb package :

reader/HomologyAlignPanel.java OK(1)(2)
reader/HomologyImagePanel.java OK(1)(2)
reader/HomologyPanel.java OK(1)(2)

reader/ProteinPanel.java OK (1),(2)

reader/QueryDataSets.java OK(1)
reader/QueryProteins.java OK(1)
reader/QueryProteinSources.java OK(1)

reader/SearchDataSets.java OK
reader/SearchProteinSources.javaOK
reader/SearchResults.java TODO (Need to reorganize the search ->
will be done at that moment)


admin/MonitorProteinRefTasks.java OK(1),(3)
admin/MonitorProteinTasks.java OK(1)
admin/MonitorTasks.java OK(1)
admin/RetireProteins.java OK(1)
admin/ShowAddProteins.java OK
admin/ShowRetireProteins.java OK

control/AfterActionMotivation.java OK
control/DetermineFunctionAction.java OK(1)
control/HomologyResultsMotivation.java OK(1)
control/NotifyFunctionMotivation.java OK
control/ParalogResultsMotivation.java DELETED
control/ProteinActionMotivation.java OK
control/ProteinActionQueue.java OK
control/ProteinRefActionQueue.java OK
control/SwissAnnotAction.java OK

(1)new methods in ProteinDB
(2) new DTO classes
(3) new classes in proteinDB

203 lines of code changed in:

vloux 2005-08-09 11:22

Formatage code

2685 lines of code changed in:

vloux 2005-08-09 11:09

BioTools :
+ ClustalWCalc
Modifications Location

Tests :
SingleInOutTest
NucleicPackageTest
NucleicTest

129 lines of code changed in:

vloux 2005-04-20 13:43

boolean NucleicFeature.existQualifier
Nettoyage du code.

409 lines of code changed in:

agmial 2005-04-13 15:30

J'ai enlev? des System.err/out.println qui polluaient les logs...

1 lines of code changed in:

vloux 2005-04-11 14:43

Nettoyage du code : imports, methodes deprecated ...

117 lines of code changed in:

agmial 2005-04-08 17:58

Parametres de FROST ... + petite boulette dans SIGSEQCalc

6 lines of code changed in:

agmial 2005-04-08 13:44

Ajout de FROST dans biotools.calc
J'ai du ajouter quelques membres dans la classe HomologyMatchPair pour mettre les informations sur la structure

RB

265 lines of code changed in:

vloux 2005-04-05 09:02

effac?s par erreur

5160 lines of code changed in:

vloux 2005-04-04 15:26

Bugfixes

0 lines of code changed in:

rbossy 2004-09-29 16:40

Initial revision

5160 lines of code changed in:

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