Module BioTools/test_input/

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Summary Period: 2004-09-29 to 2006-02-03

Modules

[root]/BioTools/test_input

Lines of Code

Total Lines Of Code: 21806 (2006-12-21 16:51)

Authors

Most Recent Commits

vloux 2006-02-03 17:43

[#189]

Tests Biotools (encore du chemin ...)
Ajout fichiers input
Extension tests

Logging avec log4j

131 lines of code changed in:

• BioTools/test_input: 1.fas.txt (new 7), export.xml (new 124), myco1.faa (changed), myco_complete.faa (changed), myco_complete.faa.phr (changed), myco_complete.faa.pin (changed), myco_complete.faa.psq (changed), seq_input.fasta (changed)

vloux 2006-02-01 16:39

Ajout Psort (Feature Request #188).
Modifs BioTools
Test basique sur sortie "long" Gram+ et Gram-

0 lines of code changed in:

• BioTools/test_input: biotools.props (changed)

vloux 2005-10-20 17:01

BugFixes :
#130 Bug Parsing CDD
#132 Passage ? Interpro V4

Ajouts de tests (en cours):
CDD
Interpro
memsat
psort

959 lines of code changed in:

• BioTools/test_input: biotools.props (changed), cdd1_out.txt (new 65), cdd2_out.txt (new 816), cdd_no_results_out.txt (new 41), frost.out (changed), interpro.out.txt (new 29), memsat_out.txt (new 8), psort_long_gram+.out (changed), psort_long_gram-.out (changed), tmhmm.out (changed)

vloux 2005-09-01 17:00

PAM Summer cleaning

DBPooling with apache dbpc and jni.

PAM refactoring :
moving all select/update/insert statement into proteindb package :

reader/HomologyAlignPanel.java OK(1)(2)
reader/HomologyImagePanel.java OK(1)(2)
reader/HomologyPanel.java OK(1)(2)

reader/ProteinPanel.java OK (1),(2)

reader/QueryDataSets.java OK(1)
reader/QueryProteins.java OK(1)
reader/QueryProteinSources.java OK(1)

reader/SearchDataSets.java OK
reader/SearchProteinSources.javaOK
reader/SearchResults.java TODO (Need to reorganize the search ->
will be done at that moment)


admin/MonitorProteinRefTasks.java OK(1),(3)
admin/MonitorProteinTasks.java OK(1)
admin/MonitorTasks.java OK(1)
admin/RetireProteins.java OK(1)
admin/ShowAddProteins.java OK
admin/ShowRetireProteins.java OK

control/AfterActionMotivation.java OK
control/DetermineFunctionAction.java OK(1)
control/HomologyResultsMotivation.java OK(1)
control/NotifyFunctionMotivation.java OK
control/ParalogResultsMotivation.java DELETED
control/ProteinActionMotivation.java OK
control/ProteinActionQueue.java OK
control/ProteinRefActionQueue.java OK
control/SwissAnnotAction.java OK

(1)new methods in ProteinDB
(2) new DTO classes
(3) new classes in proteinDB

20716 lines of code changed in:

• BioTools/test_input: blast_myco.raw (changed), mycoplasmaGenitalium.gbk (new 20716)