To sort the input files of island |
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The input files of island must be sorted: the clone locations file according to decreasing right-hand ends of clones and the anchor locations file according to decreasing anchor locations.
The shell-scripts sort.clones and sort.anchors are available in the package to create such files from non sorted ones.
Decreasing sort of the second column of a file
from the second line.
The input file must have the following structure:
The numbers must be written
in "fixed point" notation "
(i.e non exponential).
Decreasing sort of the first column of a file
from the second line.
The input file must have the following structure:
The numbers must be written
in "fixed point" notation "
(i.e non exponential).
The shell-script sort.clones
Function
Syntax
Usage restrictions
Example
sort.clones < name-of-the-file-to-be-sorted > name-of-the-sorted-file
- the first line contains the genome length in basepairs,
- each of the following lines is composed of:
The shell-script sort.anchors
Function
Syntax
Usage restrictions
Example
sort.anchors < name-of-the-file-to-be-sorted > name-of-the-sorted-file
- the first line contains the genome length in basepairs,
- each of the following lines is composed of: