2008
[1]	Martin, J., Regad, L., Etchebest, C. and Camproux, A. (2008b). Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes. Proteins. 73 672-689.
[2]	Mercier, R., Petit, M.-A., Schbath, S., Robin, S., El Karoui, M., Boccard, F. and Espeli, O. (2008). The MatP/matS site specific system organizes the Terminus region of the E. coli chromosome into a Macrodomain. Cell. 1-11. [ DOI ]
[3]	Butucea, C., Matias, C. and Pouet, C. (2008). Adaptivity in convolution models with partially known noise distribution. Electronic Journal of Statistics. 2 897-915.
[4]	Nicolas, P., Mondot, S., Achaz, G., Bouchenot, C., Bernardet, J.-F. and Duchaud, E. (2008). Population structure of the fish-pathogenic bacterium Flavobacterium psychrophilum. Appl. Environ. Microbiol. 74 3702-3709. [ DOI ]
[5]	Giraud, C. (2008). Estimation of Gaussian graphs by model selection. Electronic Journal of Statistics. 2 542-563.
[6]	Vergne, N. and Abadi, M. (2008). Poisson approximation for search of rare words in DNA sequences. ALEA. 4 223-244. [ .pdf ]
[7]	Vergne, N. (2008). Drifting Markov Models with Polynomial Drift and Applications to DNA Sequences. Statistical Applications in Genetics Molecular Biology. 7 1. [ http ]
[8]	Mary-Huard, T., Aubert, J., Mansouri-Attia, N., Sandra, O. and Daudin, J.-J. (2008). Statistical methodology for the analysis of dye-switch microarray experiments. BMC Bioinformatics. 9 98.
[9]	Martin, J., Regad, L., Lecornet, H. and Camproux, A.-C. (2008a). Structural deformation upon protein-protein interaction: a structural alphabet approach. BMC Structural Biology. 8 12.
[10]	Miele, V., Vaillant, C., D'Aubenton, Y., Thermes, C. and Grange, T. (2008). Dna physical properties determine nucleosome occupancy from yeast to fly. Nucleic Acids Research. 36 3746-3756.
[11]	Zanghi, H., Ambroise, C. and Miele, V. (2008). Fast online graph clustering via erdös-rényi mixture. Pattern Recognition. 3592-3599.
[12]	Nuel, G. (2008b). Pattern markov chains: optimal Markov chain embedding through deterministic finite automata. J. App. Proba. 226-243.
[13]	Nuel, G. (2008a). Cumulative distribution function of a geometric poisson distribution. J. Stat. Comp. and Sim. 385-394.
[14]	Rodolphe, F., Martin, J. and Della-Chiesa, E. (2008). Theoretical description of chromosome architecture after multiple back-crossing. Theoretical Population Biology. 289-299.
[15]	Aguileta, G., Marthey, S., Chiapello, H., Lebrun, M.-H., Rodolphe, F., Fournier, E., Gendrault-Jacquemard, A. and Giraud, T. (2008). Assessing the performance of single-copy genes for recovering robust phylogenies. Systematic Biology. 613-627. [ DOI ]
[16]	Daudin, J. and Mary-Huard, T. (2008). Estimation of the conditional risk in classification : The swapping method. Comp. Stat. Data Anal. 3220-3232. [ DOI ]
[17]	Celisse, A. and Robin, S. (2008). Nonparametric density estimation by explicit leave-p-out cross-validation. Comput. Statist. Data Analysis. 2350-68.
[18]	Picard, F., Daudin, J.-J. and Robin, S. (2008b). A mixture model for random graphs. Stat. Comput. 173-183.
[19]	Touzain, F., Schbath, S., Debled-Rennesson, I., Aigle, B., Leblond, P. and Kucherov, G. (2008). SIGffRid: a tool to search for σ factor binding sites in bacterial genomes using comparative approach and biologically driven statistics. BMC Bioinformatics. 9:73 1-23. [ http ]
[20]	Picard, F., Daudin, J.-J., Koskas, M., Schbath, S. and Robin, S. (2008a). Assessing the exceptionality of network motifs. J. Comp. Biol. 15:1 1-20. [ http ]
[21]	Touyar, N., Schbath, S., Cellier, D. and Dauchel, H. (2008). Poisson approximation for the number of repeats in a Markov chain model. J. Appl. Prob. 45 440-455.
[22]	Guedj, M., Nuel, G. and Prum, B. (2008). A note on allelic tests in case-control association studies. Annals of Human Genetics. 407-409.
2007
[23]	Ibrahim, M., Nicolas, P., Bessières, P., Bolotin, A., Monnet, V. and Gardan, R. (2007). A genome-wide survey of short coding sequences in streptococci. Microbiology. 153 3631-3644. [ DOI ]
[24]	Fayyaz, A., Mercier, S., Ferre, L. and Hassenforder, C. (2007b). New approximate p-value of gapped local sequence alignments. C. R. Acad. Sci. Paris. 346 87-92.
[25]	Same, A., Ambroise, C. and Govaert, G. (2007). An online classification em algorithm based on the mixture model. Statistics and Computing. 209-218.
[26]	Hassenforder, C. and Mercier, S. (2007). Exact distribution of the local score for markovian sequences. Annals of the Institue of Statistical Mathematics. 741-755.
[27]	Fayyaz, A., Mercier, S. and Ferre, L. (2007a). h-tuple approach to evaluate statistical significance of biological sequence comparison with gaps. Statistical Applications in Genetics and Molecular Biology.  22. [ http ]
[28]	Nuel, G. and Prum, B. (2007a). Analyse statistique des séquences biologiques: modélisation markovienne, alignements et motifs. Hermes.
[29]	Forner, K., Lamarine, M., Guedj, M., Dauvillier, J. and Wojcik, J. (2007). Universal false discovery rate estimation methodology for genome-wide association studies. Human Heredity. 65 183-194. [ http ]
[30]	Aschard, H., Guedj, M. and Demenais, F. (2007). A multiple-marker two-step approach for genome-wide association studies. BMC Proceedings. 1 S134. [ http ]
[31]	Martin, J., de Brevern, A. G. and Camproux, A.-C. (2007). In silico local structure approach: a case study on outer membrane proteins. Proteins. 92-109.
[32]	Yockteng, R., Marthey, S., Chiapello, H., Hood, M., Rodolphe, F., Gendrault-Jacquemard, B., A.and Devier, Wincker, P., Dossat, C. and Giraud, T. (2007). Expressed sequences tags of the anther smut fungus, microbotryum violaceum, identify mating and pathogenicity genes. BMC Genomics. 272. [ DOI ]
[33]	Nicolas, P., Bessieres, P., Ehrlich, S., Maguin, E. and van de Guchte, M. (2007a). Extensive horizontal transfer of core genome genes between two lactobacillus species found in the gastrointestinal tract. BMC Evol Biol. 7 141. [ DOI ]
[34]	Lebarbier, E. and Mary-Huard, T. (2007). Une introduction au critère bic : fondements théoriques et interprétation. Journal de la SFDS. 39-57.
[35]	Duchaud, E., Boussaha, M., Loux, V., Bernardet, J.-F., Michel, C., Kerouault, B., Mondot, S., Nicolas, P., Bossy, R., Caron, C., Bessières, P., Gibrat, J.-F., Claverol, S., Dumetz, F., Hénaff, M. L. and Benmansour, A. (2007). Complete genome sequence of the fish pathogen flavobacterium psychrophilum. Nat Biotechnol. 25 763-769. [ DOI ]
[36]	Chich, J.-F., David, O., Villers, F., Schaeffer, B., Lutomski, D. and Huet, S. (2007). Statistics for proteomics: Experimental design and 2-DE differential analysis. Journal of Chromatography B. 849 (1-2) 261-272.
[37]	Robin, S., Bar-Hen, A., Daudin, J.-J. and Pierre, L. (2007a). A semi-parametric approach for mixture models : Application to local false discovery rate estimation. Comput. Statist. Data Analysis. 51 5483-5493.
[38]	Mary-Huard, T., Robin, S. and Daudin, J. (2007b). A penalized criterion for variable selection in classification. Bioinformatics. 98(4) 695-705.
[39]	Halpern, D., Chiapello, H., Schbath, S., Robin, S., Hennequet-Antier, C., Gruss, A. and El Karoui, M. (2007). Identification of dna motifs implicated in maintenance of bacterial core genomes by predictive modelling. PLoS Genetics. 3(9) e153. [ DOI ]
[40]	Picard, F., Robin, S., Lebarbier, E. and Daudin, J.-J. (2007). A segmentation/clustering model for the analysis of array cgh data. Biometrics. 63 758-766.
[41]	Mary-Huard, T., J.-J., D., Baccini, M., Biggeri, A. and Bar-Hen, A. (2007a). Biases induced by pooling samples in microarray experiments. Bioinformatics. 23 313-318.
[42]	Nuel, G. and Prum, B. (2007b). Analyse statistique des séquences biologiques: modélisation markovienne, alignements et motifs. Hermes.
[43]	Nicolas, P., Kim, K.-M., Shibata, D. and Tavaré, S. (2007b). The stem cell population of the human colon crypt: analysis via methylation patterns. PLoS Comput Biol. 3 (3) e28. [ DOI ]
[44]	Avalos, M., Grandvalet, Y. and Ambroise, C. (2007). Parsimonious additive models. Computational Statistics and Data Analysis. 51 2851-2870.
[45]	Robin, S., Schbath, S. and Vandewalle, V. (2007b). Statistical tests to compare motif count exceptionalities. BMC Bioinformatics. 8:84 1-20. [ http ]
[46]	Roquain, E. and Schbath, S. (2007). Improved compound Poisson approximation for the number of occurrences of multiple words in a stationary Markov chain. Adv. Appl. Prob. 39 1-13. [ .ps ]
[47]	Stefanov, V., Robin, S. and Schbath, S. (2007). Waiting times for clumps of patterns and for structured motifs in random sequences. Discrete Applied Mathematics. 155 868-880. [ .pdf ]
[48]	Guedj, M., Della-Chiesa, E., Picard, F. and Nuel, G. (2007). Computing power in case-control association studies through use of quadratic approximations: application to meta-statistics. Annals of Human Genetics. 262-270.

Papers from 1995 to 2006

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Copyright: © 2008 SSB (tous droits réservés)
Author:    Sophie Schbath <schbath@ jouy.inra.fr>
Modified:  2008-02-01