June 2005 Commit Log

Number of Commits:

5

Number of Active Developers:

1

vloux 2005-06-28 17:26 #5

Raw Files access :
+ Url taken from project properties
+ Need to put a .xml file in TOMCAT_HOME/conf/Catalina/localhost/ (documented in agmial_user_guide).

18 lines of code changed in:

• Agmial2: template_project.properties (+1)
• Agmial2/ca_manager: build.xml (+1)
• Agmial2/ca_manager/web: web.xml.in (+5)
• Agmial2/pa_manager: build.xml (+1)
• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+5 -4)
• Agmial2/pa_manager/web: web.xml.in (+5)

vloux 2005-06-28 17:16 #4

Doc :
Ajout des modifs sur AGMIAL_PUBLIC
Debut de user guide

337 lines of code changed in:

• doc: agmial_admin_guide.tex (+35), agmial_install.tex (del), agmial_user_guide.tex (new 302)

vloux 2005-06-24 17:26 #3

+ Transfer annotation from a paralog (for batch to batch manual transfer)

305 lines of code changed in:

• Agmial2: .classpath (+8 -6), .project (+6), web_services.properties (+5 -5)
• Agmial2/pa_manager: build.xml (+4 -4)
• Agmial2/pa_manager/src/pam/admin: UpdateFunction.java (+252 -125)
• Agmial2/pa_manager/src/pam/reader: HomologyGraphic.java (+25 -6), ProteinPanel.java (+5 -4)

vloux 2005-06-21 10:11 #2

GlobalPanel
MugenPanel Interface (admin & readOnly) Improved
Multiple bugfixes

3755 lines of code changed in:

• Agmial2/agmial_directory/web: web.xml (+7 -7)
• Agmial2/ca_manager: build.xml (+2 -2)
• Agmial2/ca_manager/src/cam/admin: AddBatch.java (+9 -3), ContigStoreAdminIF.java (+1 -2), ContigStoreAdminImpl.java (+33 -11), GlobalAdmin.java (new 200), ProfileStoreAdminIF.java (+1 -1), ProfileStoreAdminImpl.java (+3 -1), ShowAddBatch.java (+74 -71), ShowAdminBatches.java (+41 -39)
• Agmial2/ca_manager/src/cam/reader: ContigStoreQueryIF.java (+1 -1), ContigStoreQueryImpl.java (+3 -1), EditFeature.java (+22 -5), MugenPanel.java (+3090 -2327)
• Agmial2/ca_manager/src_wsdl: ProteinSourceAdmin.wsdl (+12)
• Agmial2/ca_manager/web: web.xml.in (+12)
• Agmial2/pa_manager/src/pam/admin: GlobalAdmin.java (new 207), ProteinSourceAdminIF.java (+1), ProteinSourceAdminImpl.java (+4 -1), ShowAdminSources.java (+9 -2)
• Agmial2/pa_manager/src_wsdl: ContigStoreAdmin.wsdl (+12), ContigStoreQuery.wsdl (new), ProfileStoreAdmin.wsdl (new), ProfileStoreQuery.wsdl (new)
• Agmial2/pa_manager/web: web.xml.in (+11)

vloux 2005-06-15 15:42 #1

BioTools :
+ NucleicFeatureLocation gere les localisations de type join(www..xxx,yy..zzz)
+ Test unitaires :
- GenBankTextTest
- SequinEntryTest
- NucleicFeatureLocationTest
regroup?s sous la classe NucleicPackageTest qui est une suite des test precedents.

992 lines of code changed in:

• BioTools: build.xml (+45 -35)
• BioTools/src/biotools/nucleic: GenBankTextTest.java (new 9), Location.java (new 160), NucleicFeatureLocation.java (+458 -159), NucleicFeatureLocationTest.java (new 314), NucleicPackageTest.java (new 6)

May 2005 »