November 2006 Commit Log

Number of Commits:

12

Number of Active Developers:

1

vloux 2006-11-25 14:35 #12

+ EC transfert : if descript contains (EC x.x.x.x) pattern, tansfer it to EC field

36 lines of code changed in:

• Agmial2/pa_manager/src/pam/admin: ProteinSourceAdminImpl.java (+1 -1)
• Agmial2/pa_manager/src/pam/control: DetermineFunctionAction.java (+34 -10)
• Agmial2/pa_manager/src/pam/reader: ProteinPanel.java (+1 -1)

vloux 2006-11-22 18:10 #11

- EasyQB : changed default limit for list (5000) and DOJOTable (100) both in DisplayerAdpater and web.xml.in
- ExternalTools : bugfix in the way multiple generated form are named

10 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: ExternalTools.java (+2 -2)
• Agmial2/pa_manager/src/pam/view: DisplayerAdapter.java (+2 -2)
• Agmial2/pa_manager/web: web.xml.in (+6 -3)

vloux 2006-11-22 17:30 #10

ProteinDB : getPAMotifFeature : added paramId filter.

1 lines of code changed in:

• Agmial2/pa_manager/src/pam/protdb: ProteinDB.java (+1 -1)

vloux 2006-11-22 17:29 #9

- GlobalPanel : cosmetic fix.
- Added a new page "External Tools" with links to blast, artemis and metabolism comparison.

203 lines of code changed in:

• Agmial2/pa_manager: build.xml (+6 -4)
• Agmial2/pa_manager/src/pam/reader: ExternalTools.java (new 166), GlobalPanel.java (+7 -4)
• Agmial2/pa_manager/web: web.xml.in (+24)
• Agmial2/pa_manager/web/reader: main_menu.html.in (changed)

vloux 2006-11-18 16:48 #8

*** empty log message ***

1 lines of code changed in:

• Agmial2: template_project.properties (+1)

vloux 2006-11-18 16:21 #7

ProteinDB : getPAMotifFeature : added paramId filter.

2 lines of code changed in:

• Agmial2/pa_manager/src/pam/protdb: ProteinDB.java (+2 -2)

vloux 2006-11-16 17:39 #6

Addition of a statistics page with pie charts (Function, Status, EC) made with JFreeChart : cosmetic fix

21 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: GlobalPanel.java (+21 -5)

vloux 2006-11-16 16:46 #5

Addition of a statistics page with pie charts (Function, Status, EC) made with JFreeChart.

594 lines of code changed in:

• Agmial2/pa_manager: build.xml (+4 -1)
• Agmial2/pa_manager/src/pam/protdb: PAMProtein.java (+1), ProteinDB.java (+205 -5)
• Agmial2/pa_manager/src/pam/reader: GlobalPanel.java (new 143), GlobalPieChart.java (new 209)
• Agmial2/pa_manager/web: web.xml.in (+32)
• Agmial2/pa_manager/web/lib: jcommon-1.0.5.jar (new), jfreechart-1.0.2.jar (new)
• Agmial2/pa_manager/web/reader: main_menu.html.in (changed)

vloux 2006-11-15 12:03 #4

Cosmetic fixes
Database creation script updated
Copied EasyQB metadata script creation helpers in PAM SQL directory

1 lines of code changed in:

• Agmial2/pa_manager/sql/script_bd: README (+1 -1)

vloux 2006-11-15 11:06 #3

Cosmetic fixes
Database creation script updated
Copied EasyQB metadata script creation helpers in PAM SQL directory

841 lines of code changed in:

• Agmial2/pa_manager/sql: protdb_creation.sql (+356)
• Agmial2/pa_manager/sql/script_bd: Attribute.dat (new), Attribute_Has_Default_Value.dat (new), Attribute_Has_Type.dat (new), Linked_With.dat (new), Object_Has_Condition.dat (new), Object_Has_Table.dat (new), Operator.dat (new), README (new 3), Request_Object.dat (new), Table_Name.dat (new), Type.dat (new), Type_Has_Operator.dat (new), copyTable.sql (new 25), crebas.sql (new 415), requestObject_Group.dat (new)
• Agmial2/pa_manager/src/pam/view: ButtonDisplayer.java (+1 -1), ResultDisplayer.java (+41 -35)

vloux 2006-11-14 17:41 #2

Regression fix : Fasta export and List save

59 lines of code changed in:

• Agmial2/pa_manager/src/pam/reader: QueryProteins.java (+2 -2)
• Agmial2/pa_manager/src/pam/view: ResultDisplayer.java (+57 -1)

vloux 2006-11-06 16:37 #1

GPL Header

478 lines of code changed in:

• Agmial2/pa_manager/src/pam/controler: HtmlConstant.java (+19), IdHandler.java (+19), ListSearchParameter.java (+20 -1), ResponseBuilder.java (+19), ResultSetManager.java (+19)
• Agmial2/pa_manager/src/pam/database: DatabaseAdapter.java (+19), MetaDataRetriever.java (+19), QueryBuilder.java (+19)
• Agmial2/pa_manager/src/pam/modele: Condition.java (+19), DateManager.java (+19), Group.java (+19), Operator.java (+19), QueryResultObject.java (+19), RequestObject.java (+19), SearchParameter.java (+19)
• Agmial2/pa_manager/src/pam/searchServlet: ExportServlet.java (+19), InnerSearchServlet.java (+21 -1), RefactoredSearchPanel.java (+19)
• Agmial2/pa_manager/src/pam/view: ButtonDisplayer.java (+19), Displayer.java (+19), DisplayerAdapter.java (+19), HtmlDisplayer.java (+19), MessageDisplayer.java (+19), ResultDisplayer.java (+19), SearchParameterDisplayer.java (+19)

October 2006 »