1971 lines of code changed in:
-
BioTools/src/biotools/calc:
BioCalc.java (+22 -3),
CDDText.java (+19 -14),
COILCalc.java (+1 -1),
COILParams.java (+1 -2),
CalcParams.java (-1),
FROSTText.java (+11 -5),
HomologyMatchPair.java (+16 -16),
INTERPROCalc.java (+81 -40),
INTERPROParams.java (+16 -2),
INTERPROText.java (+7 -7),
MEMSATText.java (+31 -31),
PSORTText.java (new 116)
-
BioTools/src/biotools/nucleic:
GenBankTextTest.java (del)
-
BioTools/src/test/biotools/calc:
CDDTest.java (new 90),
CoilCalcTest.java (new 78),
FROSTTest.java (new 72),
INTERPROCalcTest.java (new 80),
INTERPROTest.java (new 71),
MEMSATTest.java (new 57),
PSORTTest.java (new 71),
TMHMMTest.java (new 44)
-
BioTools/src/test/biotools/nucleic:
GenBankTextTest.java (new 97),
NucleicPackageTest.java (+2),
NucleicTest.java (+29 -9)
-
BioTools/test_input:
biotools.props (new),
cdd1_out.txt (new 65),
cdd2_out.txt (new 816),
cdd_no_results_out.txt (new 41),
frost.out (new),
interpro.out.txt (new 29),
memsat_out.txt (new 8),
psort_long_gram+.out (new),
psort_long_gram-.out (new),
tmhmm.out (new)