October 2006 Commit Log

Number of Commits:

9

Number of Active Developers:

2

vloux 2006-10-31 16:43 #9

Various test backbones
Added a test (BioToolsTest) that check the avalaibility of the executables described in ./biotool.props
Changed build.xml to run the proper test.
ATTN problem with Ant classloading -> ant must be launched with -lib and path to ant-junit.jar and junit.jar OR , in case of eclipse, those two modules have to be added on the ant classpath

298 lines of code changed in:

• BioTools: biotools.props (+29 -41), build.xml (+39 -26)
• BioTools/src/biotools/calc: INTERPROText.java (+9 -7)
• BioTools/src/biotools/util: BioResources.java (+16)
• BioTools/src/test/biotools: BioToolsTest.java (new 53), BioToolsTestSuite.java (+1)
• BioTools/src/test/biotools/calc: INTERPROTest.java (+19 -6), SingleInOutTest.java (+51 -40)
• BioTools/src/test/biotools/nucleic: GenBankTextTest.java (+25), NucleicPackageTest.java (+1 -1)
• BioTools/src/test/biotools/protein: ProteinPackageTest.java (new 39), ProteinTest.java (+16 -3)

vloux 2006-10-30 15:50 #8

Deployment : corrections in build.xml of common and biotools (properties inheritance).

532 lines of code changed in:

• Agmial2: build.xml (+137 -139)
• Agmial2/agmial_directory: build.xml (+123 -123)
• Agmial2/ca_manager: build.xml (+29 -39)
• Agmial2/common: build.xml (+44 -52)
• Agmial2/pa_manager: build.xml (+198 -200)
• BioTools: build.xml (+1 -1)

vloux 2006-10-25 15:40 #7

Redirection from xxx-prot/ empty directory to reader/index.html

15 lines of code changed in:

• Agmial2/pa_manager/web: index.html (new 15)

vloux 2006-10-25 13:56 #6

Merge CedricSoubrie branch and HEAD

3544 lines of code changed in:

• Agmial2/pa_manager/web/js/src: date.js (new 761)
• Agmial2/pa_manager/web/js/src/fx: __package__.js (new 15), html.js (new 573), svg.js (new 99)
• Agmial2/pa_manager/web/js/src/lfx: Animation.js (new 476), __package__.js (new 15), extras.js (new 119), html.js (new 535), toggle.js (new 54)
• Agmial2/pa_manager/web/js/src/widget: SortableTable.js (new 38), __package__.js (new 23)
• Agmial2/pa_manager/web/js/src/widget/html: SortableTable.js (new 582)
• Agmial2/pa_manager/web/reader: .cvsignore (new 1), 403_error.html (new 14), admin_intro.html (new 23), browse_intro.html (new 23), error.html (new 13), file_not_found_error.html (new 14), iframe_history.html (new 54), index.html (new 19), login_error.html (new 15), main_intro.html (new 43), main_intro.html.in (new), main_menu.html (new 19), main_menu.html.in (new), server_error.html (new 15), sidebar_intro.html (+1 -1)

vloux 2006-10-25 11:41 #5

Merge CedricSoubrie branch and HEAD

15429 lines of code changed in:

• Agmial2: build.xml (+4 -3)
• Agmial2/ca_manager/web: main_menu.html (+3 -2), main_menu.html.in (changed), web.xml (+18 -18)
• Agmial2/pa_manager: build.xml (+10 -10), pam_manager.properties (del), pam_manager.properties.in (del)
• Agmial2/pa_manager/src/pam/admin: GlobalAdmin.java (+2 -2)
• Agmial2/pa_manager/src/pam/control: PAMActionQueue.java (+1 -1), PAMControl.java (+10 -5), ProteinActionQueue.java (+5 -1)
• Agmial2/pa_manager/src/pam/controler: HtmlConstant.java (new 190), IdHandler.java (new 342), ListSearchParameter.java (new 641), ResponseBuilder.java (new 260), ResultSetManager.java (new 116)
• Agmial2/pa_manager/src/pam/database: DatabaseAdapter.java (new 162), MetaDataRetriever.java (new 577), QueryBuilder.java (new 487)
• Agmial2/pa_manager/src/pam/lifecycle: ContextListener.java (+2)
• Agmial2/pa_manager/src/pam/modele: Condition.java (new 843), DateManager.java (new 67), Group.java (new 26), Operator.java (new 75), QueryResultObject.java (new 102), RequestObject.java (new 137), SearchParameter.java (new 78)
• Agmial2/pa_manager/src/pam/protdb: MetaDataRetriever.java (del), ProteinDB.java (+4 -2), QueryBuilder.java (del)
• Agmial2/pa_manager/src/pam/reader: FindResult.java (new 126), ProteinPanel.java (+2 -8)
• Agmial2/pa_manager/src/pam/searchServlet: ExportServlet.java (new 172), InnerSearchServlet.java (new 435), RefactoredSearchPanel.java (new 142)
• Agmial2/pa_manager/src/pam/view: ButtonDisplayer.java (new 197), Displayer.java (new 72), DisplayerAdapter.java (new 309), HtmlDisplayer.java (new 233), MessageDisplayer.java (new 97), ResultDisplayer.java (new 212), SearchParameterDisplayer.java (new 852)
• Agmial2/pa_manager/web: ProteinSourceAdmin_Config.patch (del), context.xml.in (changed), main_menu.html (del), pam.css (+386 -95), web_public_dir.xml (del), web_public_dir.xml.in (del)
• Agmial2/pa_manager/web/js: dojo.js (new 7445), pam.js (+587 -1)
• Agmial2/pa_manager/web/jsp: login.jsp (del)

vloux 2006-10-25 11:34 #4

Merge CedricSoubrie branch and HEAD

5 lines of code changed in:

• Agmial2/ca_manager/src/cam/admin: GlobalAdmin.java (+2 -2)
• Agmial2/ca_manager/src/cam/control: BatchCalcAction.java (+1)
• Agmial2/ca_manager/src/cam/lifecycle: ContextListener.java (+2 -2)

vloux 2006-10-24 16:29 #3

Merge CedricSoubrie branch and HEAD

52 lines of code changed in:

• Agmial2: build.xml (+3 -3)
• Agmial2/agmial_directory/web: web.xml (+9 -9)
• Agmial2/agmial_directory/web/jsp: index.jsp (+9 -3)
• Agmial2/ca_manager: build.xml (+1 -2)
• Agmial2/ca_manager/src/cam/reader: MugenPanel.java (+5 -4)
• Agmial2/ca_manager/web: main_menu.html (+2 -2), web.xml (+19 -19)
• Agmial2/common: build.xml (+4 -4)

vloux 2006-10-24 11:31 #2

Merge CedricSoubrie branch and HEAD

135 lines of code changed in:

• Agmial2/pa_manager/web: web.xml.in (+135 -1)

csoubrie 2006-10-02 15:13 #1

Final version of the refactored Search

1 lines of code changed in:

• Agmial2/pa_manager/web: 403_error.html (del), admin_intro.html (del), browse_intro.html (del), context.xml.in (changed), error.html (del), file_not_found_error.html (del), index.html (del), javascript_error.html (+1 -1), login_error.html (del), main_intro.html (del), main_intro.html.in (del), main_menu.html.in (del), server_error.html (del), sidebar_intro.html (del)

September 2006 »